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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTAAGAAGAAATGCACTCAAAATGGATGTTCCAGAAAAGATTCTTTCACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaactatctatcgtaggtgtacataatacttcatagtgtatgctgcattccgctctcaagttttatctagttcttatagtgcgttgaaggtacat...

Basic information

species Zea mays
transcript GRMZM2G051138_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G051138_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g13850.1 (Oryza sativa), 5'ss of exon 9
AACCTAAGAAGAAATGCACTCAAAATGGATGTTCCAGAAAAGATTCTTTCACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaactatctatcgtag-gtgtacataatacttcatagtgtatgctgcattccgctctcaa--gttttatctagttcttatagtgcgttgaaggtacat
|| |||||||||||| |||||||||||||| ||||||||||| |||| || ||||| || |||||||| || |||||||  || |||||  ||| |||||||||  |   |    |  ||   ||   || ||||   || |  |||  | |  |  |||   |   || |||| |  |||  ||  | |||||  |  ||| 
AAACTAAGAAGAAATCCACTCAAAATGGATATTCCAGAAAAGGTTCTGTCTCAAGCGCATGGAAAAGTGCGGACAGTTGCTGACTTTCTGCATGAAAATGgtaaacattgaaaagttttaccatgagtatcatacactat-gcatattatactgtatgcttgtagctgtgttatatgattcc-atgct-cgttgttgaaacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91875851|gb|EB405808.1|EB405808
EST:     AAGCACACGGAAAAGTACGAACAGTTGGGGATTTTCTTTATGAAAATG                         TTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
genomic: AAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
EST: gi|78079476|gb|DV507888.1|DV507888
EST:     ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGAAAATG                         TTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
genomic: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
EST: gi|78122197|gb|DV540581.1|DV540581
EST:     ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGAAAATG                         TTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
genomic: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTCATTGACAGTGAAGCTGTTGATGATGCATGGGCTGTGGTAT
EST: gi|166587328|gb|EG226754.1|EG226754
EST:     ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGAAAATG                         TTATTGATTTC
genomic: ACAAGCACACGGAAAAGTACGAACAGTTGTGGATTTTCTTTATGTAAATGgtaagtaact ... tgctttgcagTTATTGATTTC