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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGTACCAAGAAGCGTTACTTCAACAGTGCATTTTTGGGATACGCTGTGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctgttactcaggtttatatttgtctagtttctccttgtttctgccatccctgtaatattaatactatgattgttttggcggggtttattgcag

Basic information

species Zea mays
transcript GRMZM2G044348_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044348_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 10
AAGAGGTACCAAGAAGCGTTACTTCAACAGTGCATTTTTGGGATACGCTGTGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctgtta--ctcaggtttatatt-tgtctagtttctccttgtttc--tgccatccctgtaatattaatactatgattgttttggcggggtttattgcag-------------------------------------------------------------------------------------------
 ||||| |    ||| |  ||||| || |||||||||||||||||  |    ||| ||   || || || ||||| ||||||||||||||||| |||||||||  | ||   |    ||  | | |||  | | |   |  | | |||     |    | ||  |  |   | | |  | | | | | |  ||  || | ||                                                                                              
CAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGTAACAATTGTTGTCATGAACTGGTTTCAAGCTGCACAGgtgactactacaaaatccatttctctatcctatatgactgatacgtgtggagatatagttccctttgttgaatttcattcagtatctagctggctttaactgtttaagaccagtggaagttagagtatttccatgtgtgagttttctcgtgttattcactacttggtcctaactgttattctaacttcactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149027787|gb|EE154597.2|EE154597
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG                         CCTGCTTTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|94475589|gb|EB704547.1|EB704547
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|32941489|gb|CF046308.1|CF046308
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|67018214|gb|CO446963.1|CO446963
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|166524226|gb|EG099008.1|EG099008
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGAT
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGAT
EST: gi|149100816|gb|EE186910.2|EE186910
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|5688693|gb|AI941708.1|AI941708
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCGCAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|166684693|gb|EG101593.1|EG101593
EST:     GTTTCAAGCGGCGCAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: GTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|148943972|gb|EC889053.2|EC889053
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|71426478|gb|DR807528.1|DR807528
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG                         CCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTTCCTGGTGTGATTGGTTTTGTCGCTGTTCCC
EST: gi|194716887|gb|FK934046.1|FK934046
EST:     TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAG                         CCTGCTCTACTATACCTTGTTNCCTGGTGTGATTGGTTTTGTCGCTGTTCC
genomic: TGGGTATGACGGTGACCATCGTTGTAATGAACTGGTTTCAAGCGGCACAGgtgtgttctg ... tttattgcagCCTGCTCTACTATACCTTGTT-CCTGGTGTGATTGGTTTTGTCGCTGTTCC