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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagtttttttcatcttctattgtgtcatcctcattatgccacttaaaataaattgacatcatcatctcaaggctatatgtcagtgggacatcaaattg...

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043350_T01 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 5'ss of exon 10
ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagtttttttcatcttctattgtgtcatcctcattatgccacttaaaataaattgacatcatcatctcaaggctatatgtcagtgggacatcaaattg---------
|||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||||||||||||  || ||||||||||   ||  |  |||      |||| |||    |  | ||| || ||| | ||       |      || || | |     |  | |||||          
ATCTTCCACAAGCGAATGCCTCCCGAAGCAATAGATCTTGTGTCCCGTCTCCTTCAGTATTCGCCAAATCTGCGATGTACTGCGgtaagtttttg--atgcttgatt------tcctgattgaaac-ttgaaagtatattaaaattgctgcatgcctattaaattttacacacatttgaaattcactaaaaag

upper sequence: GRMZM2G043350_T01 (Zea mays), 5'ss of exon 10
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 9
ATCTTCCACAAGAGAATGCCTCCAGAAGCAATAGATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagtttttttca---tcttctattgtgtcatcctcattatgccacttaaaataaattgacatcatcatctcaaggctatatgtcagtggga-catcaaattg-
 | ||||||||| | ||||||||||||||| ||||||| |||||  | || |||||||| || ||||||||||| || |  || || |||  |        | |||| |||||   |  | ||   ||     |   |   ||   || |   | ||     | | | |  |||||| ||  |  ||| 
GTTTTCCACAAGCGCATGCCTCCAGAAGCAGTAGATCTGGTTTCAAGGCTACTTCAGTACTCTCCGAATCTGCGGTGCAATGCTgtgagtgatgacggggtttttctgttgtgaagtgttgatcgcgcagaccatcgttggttacgatgaatctttc-----tctctattggtgggaacaggatgttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149101574|gb|EE187700.2|EE187700
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|32848647|gb|CD988328.1|CD988328
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|71759011|gb|DR956948.1|DR956948
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60346873|gb|DN213846.1|DN213846
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGTGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60353976|gb|DN220949.1|DN220949
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|71446525|gb|DR827575.1|DR827575
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|78092424|gb|DV520798.1|DV520798
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60338451|gb|DN205424.1|DN205424
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60401450|gb|DN234257.1|DN234257
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGTGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
EST: gi|60399024|gb|DN231840.1|DN231840
EST:     ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCA                         CTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA
genomic: ATCTTGTTTCCCGTCTTCTTCAGTATTCGCCGAATCTGCGATGTAGCGCAgtaagttttt ... attgttctagCTTGAGGCGTGTGCTCATTCATTCTTTGACGAATTACGAGAATCACATGCA