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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttccattgctgagactactatttttttcttacctctgttggattacttatgaacaaattgttcaaagcttcaaaccagttgcagacttgcagtg...

Basic information

species Zea mays
transcript GRMZM2G042027_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os05g29860.1 (Oryza sativa), 5'ss of exon 8
GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttccattgctgagactactatttttttcttacctctgttggattacttatgaacaaattgttcaaagcttcaaaccagtt--gcagacttgcagtg-----
|| ||||| || ||| ||||||||||||| || ||||||||||| || ||||| || |||||||||||||||||||| |||||| ||||||||||    |||  || || || || | ||  |   | |  | ||  | | ||  | | |||    | | | || ||| || |  |    | |  || ||       
GGATATGGATCATTTTTACTTCGAGATCTGCCTTTTGATGCCATTCAATTCTGTATATATGAGCAACTTCGAATTGGTTACAAAGTTGTGgtacc----cat--cttagcct-ctgtcttgatgagaaccatattttacttctggttagcaatccttactaggcctcagacgacctcaatataaatgtaggattgag

upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 8
lower sequence: PP1S450_16V6.1 (Physcomitrella patens), 5'ss of exon 9
GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgta--ccgttccattgctgagactactatttttttcttacctctgttggattacttatgaacaaattgttcaaagcttcaaaccagttgcaga-cttgcagtg--------------------------------------------------------------------------------------
|||| ||| || || || ||||||||| ||||||||||||| |||||||| |||||||| ||||| ||| || | ||||  ||    ||||||         || | |     |   |   ||     || |||||      ||   | |  |  |||||  ||   | ||   |     ||| ||   ||||                                                                                      
GGTTTTGGATCTTTCCTCCTTCGAGATTTACCATTTGATGCTATCCAGTTTTGCATTTACGAGCAGCTTAGATTGGGCTTGAAGAAAGTGgtaagttaacttatggatagctttttcaaggttggaacacatctgtatacgcaca-gttacgattttgttttaaatcttaagagaagaatagaactaaaagtgtgtgtcatcaccgggctgttctatgtatttatagttgctctcagaggagttgacgttgaattaatgcttgtttttcactctttcag

upper sequence: GRMZM2G042027_T05 (Zea mays), 5'ss of exon 8
lower sequence: PP1S139_9V6.1 (Physcomitrella patens), 5'ss of exon 9
GGTTATGGTTCCTTTCTACTTCGAGATCTACCATTTGATGCCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTA--CAAACTTGTGgtaccgttccattgctgagac-tactatttttttcttacctctgttgga----ttacttatgaacaaattgtt--caaagcttcaaaccagttgcagacttgcagtg
|| | | |||| ||  |  | ||||| ||||||||||||||  ||||||| ||||| ||||||||| |    ||  | ||  ||||   |  || |  |||  |  ||  ||  ||   ||      |||    | |  ||    | |  | |    ||||| ||  ||| |  |         | ||   ||  ||  
GGCTTTCGTTCATTCTTGTTACGAGACCTACCATTTGATGCATTCCAGTTTTGCATCTATGAGCAATTAAAGATCAGTTATGCAAAACGGgtgtgcacttctttcactctgaaatagggttcaacaattattcgtatgcgaaaattgatctttacgtaaatttttaacaagggatgtctttgtcttcaactttttag--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78092776|gb|DV521150.1|DV521150
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|28984641|gb|BQ539144.2|BQ539144
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|113702185|gb|EE679689.1|EE679689
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|113702087|gb|EE679591.1|EE679591
EST:     TGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: TGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|71302083|gb|DR787129.1|DR787129
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|76011416|gb|DT938586.1|DT938586
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|71302081|gb|DR787128.1|DR787128
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|16918359|gb|BM073712.1|BM073712
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|211226520|gb|FL435621.1|FL435621
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|91054196|gb|EB164614.1|EB164614
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|91056577|gb|EB166995.1|EB166995
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|33092443|gb|CF052437.1|CF052437
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|78083391|gb|DV511784.1|DV511784
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|60342707|gb|DN209680.1|DN209680
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
EST: gi|67018887|gb|CO447636.1|CO447636
EST:     CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTG                         GCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT
genomic: CCATCCAGTTCTGCATTTATGAGCAACTTCGAATTGGCTACAAACTTGTGgtaccgttcc ... cattatccagGCGAAAAGGGAGTTGAATGATCCAGAGAATGCACTTATCGGTGCTTTTGCT