1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataataagtttgttaagcatctatgaattatgattctatttatgttattattatgttctatatttaatttaagatcacacgttaatgcttgaaccttctgcacttacag
species | Zea mays |
transcript | GRMZM2G041181_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTAEST: gi|60342784|gb|DN209757.1|DN209757
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTA
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|32906331|gb|CF011144.1|CF011144
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|76018527|gb|DT945697.1|DT945697
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTEST: gi|149103005|gb|EE288366.2|EE288366
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTTTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|74239804|gb|DT647718.1|DT647718
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|76018526|gb|DT945696.1|DT945696
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|29543932|gb|CB604312.1|CB604312
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: TGGATTGTTCTTCTTGCTTTACGTG TTCCCCATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|78023022|gb|DV491409.1|DV491409
genomic: TGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|50322749|gb|CO517875.1|CO517875
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGEST: gi|67033086|gb|CO461835.1|CO461835
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTG
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|94472178|gb|EB701136.1|EB701136
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCCTGT-GTATTEST: gi|110944605|gb|EE164762.1|EE164762
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCC-TGTTGTATT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTTEST: gi|50325032|gb|CO520158.1|CO520158
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
EST: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTG TTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
genomic: GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataa ... gcacttacagTTCCACATTCTTTTCTGCGTATTTTCTGCTGTGGCTCCTCCTGTTGTATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACTGATAGCGCATTGAAGTTTGGATTGTTCTTCTTGCTTTACGTAgtaaatataataagtttgttaagcatctatgaattatgattctatttatgttattattatgttctatatttaatttaagatcacacgttaatgcttgaaccttctgcacttacag
- - - - - - TTGAAG