Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtacttttttttgaccttttacctacttatctcattgtctgatttctgcatccacattctcacttgttatgtcaagcataaaccttttgaaatgttagca...

Basic information

species Zea mays
transcript GRMZM2G040017_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G040017_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g55940.1 (Oryza sativa), 5'ss of exon 9
GACATAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtacttttt--tttgaccttttacctacttatc-tcattgtctg-atttctgcatccacattctcacttgttatgtcaagcataaaccttttg--aaatgttagca------------------------------------------------------------------------------------
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |   |  |   || | ||| ||   |||  ||   || || ||||| |||      |  |||  |   |||    |||| ||| || |    |||  |                                                                                        
GACATAACACTGGGTGTTGCAATTGGGTCATCAACGCAGATATCAATGTTTGTGgtaatgcatggtcaaacttgttatctcactatgatctgagtatgcatttccgcacttgt-tcatcaaataccatgctg-gcatgaacgttctacagaatactgtgttcattccagatcttgcatttgttcatttatcatatcctattttcatctttgttattttttacatatgttattctccatatacag

upper sequence: GRMZM2G040017_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G00380.2 (Glycine max), 5'ss of exon 8
GACATAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtacttttttttgaccttttacctacttatctcattgtctgatttctgcatccacattctcacttgttatgtcaagcat----aaaccttttgaaatgttagca---------------------------------
|| || ||  | || ||||| ||||| ||||| ||||||||||| ||||||||||||     ||      || |      ||||    || | ||   | | |||  ||  | ||  ||  |   | ||  ||     |    | ||  ||   || |                                 
GATATCACTATTGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTGgtatagccttcaactgttattaaatgttattaacttatttggggtgtacatttactatatctttttgtgaataaactatcctggatttctctgtcataggagaaagttgatgattcttattctcttgaaaattgtag

upper sequence: GRMZM2G040017_T02 (Zea mays), 5'ss of exon 9
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 5'ss of exon 9
GACATAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtacttttttttgaccttttacctacttatctcattgtctgatt---tctgcatccacattctcacttgttatgtcaagcataaaccttttgaaatgttagca
||||| ||| | || ||||||||||||||||| ||||| ||| ||||||||||||||  | ||    | | |   |  | |  | ||||   ||  ||   |||| |    ||||   |  | || |  ||    |    || ||    | ||    
GACATCACAATCGGAGTTGCAATTGGTTCATCTACACAAATAGCAATGTTTGTGgtaagtcttcaaaatcatccccagaatgttgtcatcaactttttaaatctgaaagggcatttagaactctttt-ccatttttttttctatttggtttttgt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211272295|gb|FL440029.1|FL440029
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACMCAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: gi|149085153|gb|EE174657.2|EE174657
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: gi|211010290|gb|FL457993.1|FL457993
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: gi|91868897|gb|EB400200.1|EB400200
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: gi|32837305|gb|CD976983.1|CD976983
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: gi|32836604|gb|CD976282.1|CD976282
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
EST: gi|148972711|gb|EE023671.2|EE023671
EST:     TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTG                         ATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG
genomic: TAACACTGGGTGTTGCAATTGGTTCATCAACACAGATATCAATGTTTGTGgtactttttt ... tccaatgcagATTCCATTTTGTGTTGTTATTGGTTGGATGATGGGACAAAGGATGGACTTG