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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATCAAGCGGGAATGTTTGCTCAATTATATATTGCCTTGAACGGGCAGCTTGTGATGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTGTGCTGgtatgctgattgaagtcataattagcacttaatgacttcaagttgtagcaagattgttgcattggaattcttctgatgtttctatgtgcatctccataatag

Basic information

species Zea mays
transcript GRMZM2G039683_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039683_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g54020.1 (Oryza sativa), 5'ss of exon 10
AAATCAAGCGGGAATGTTTGCTCAATTATATATTGCCTTGAACGGGCAGCTTGTGATGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTGTGCTGgtatgctgatt-gaagtcataattagcacttaatgacttcaagttgtagcaagattgttgcattg-gaattcttctgatgtttctatgtgcatctccataatag
|| || || || ||||||||||||||| | || || |||||||| || | ||||||||||||||  ||||||||||||||||||||| |||| | |||||||| | | |||  |||||| ||||      |||     | |||   ||  | || ||||| |||| ||||| |  ||    | || |||   ||||| ||  ||
AAGTCCAGTGGAAATGTTTGCTCAATTGTGTACTGTCTTGAACGTGCGGTTTGTGATGATCTAACTATGCATTTGTCACAGCAGGGTATCTCCTCTGCTGgtacgttaatttaaagtcacaatt----tctaa--gtcttaagacctattaggactgttgaattgagaattttcatggcagtcctgtgt---tctccttatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60399085|gb|DN231899.1|DN231899
EST:     TTGTGATGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTGTGCTG                         CTTATCATGCTGGCCTAAATAGTAAAGTGCGAAGTTCTGTTCTCGATGACT
genomic: TTGTGATGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTGTGCTGgtatgctgat ... tccataatagCTTATCATGCTGGCCTAAATAGTAAAGTGCGAAGTTCTGTTCTCGATGACT
EST: gi|60350164|gb|DN217137.1|DN217137
EST:     TTGTGATGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTGTGCTG                         CTTATCATGCTGGCCTAAATAGTAAAGTGCGAAGTTCTGTTCTCGATGACT
genomic: TTGTGATGATCTAAGCATGCATTTGTCACAGCAGGGTGTCTCTTGTGCTGgtatgctgat ... tccataatagCTTATCATGCTGGCCTAAATAGTAAAGTGCGAAGTTCTGTTCTCGATGACT