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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacggctttttaaagttggtgtctggtctccacacgacagaacagctatttctctacaagttgattccatcgtgtgcaacgtttcaccagctgtacattttccgtctgtgacatgttcaccattgctgaagctgtttttcttgtgcag

Basic information

species Zea mays
transcript GRMZM2G038791_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009691|gb|FL435043.1|FL435043
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|60338563|gb|DN205536.1|DN205536
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|91052223|gb|EB162641.1|EB162641
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCNNNNNNNNNGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|19770111|gb|BQ034832.1|BQ034832
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|74243299|gb|DT651213.1|DT651213
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|78085035|gb|DV513428.1|DV513428
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|60350838|gb|DN217811.1|DN217811
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|32913300|gb|CF018112.1|CF018112
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|71429935|gb|DR810985.1|DR810985
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|76011084|gb|DT938254.1|DT938254
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|93016209|gb|EB641729.1|EB641729
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|211276932|gb|FL386926.1|FL386926
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|86468618|gb|DY234988.1|DY234988
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|78544258|gb|DV621756.1|DV621756
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|211123271|gb|FL408205.1|FL408205
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|110204864|gb|EC886761.1|EC886761
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|60398185|gb|DN231001.1|DN231001
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|78125653|gb|DV544037.1|DV544037
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|78544420|gb|DV621918.1|DV621918
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|211292499|gb|FL395084.1|FL395084
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|76914465|gb|DV165541.1|DV165541
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
EST: gi|19769635|gb|BQ034356.1|BQ034356
EST:     GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAG                         GAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT
genomic: GTTGGTCATGAGCCATACTCCAGCTTGGATATTGACTGATGCTTAAGgtgagaacgg ... tcttgtgcagGAATAGTTGTGGCAGCTCGCAACCTTCTCTTTCTTTTCTTTTGGCCTCGGT