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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAGgttggttatattctcattagctgcagtttccattaataaatggtcttccttaacctatcctcttgtttctttttgcag

Basic information

species Zea mays
transcript GRMZM2G037923_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G037923_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os07g07560.1 (Oryza sativa), 5'ss of exon 9
CATCCAAGTGGAGAGAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAGgttggttatattctcat--tagctgcagttt-ccattaata-aatggtcttccttaacctatcctcttgtttctttttgcag
|||| || ||||| |||      || || |||||||||||||| ||| |||||||||||||||||||||  ||||||||    || ||||  | |  |  | ||| | || | ||   | |  | |    | |||| ||||     
CATCGAAATGGAGGGAGTCATCAGGGCAACATGTTGATTATGACCAAAGGCCTGATATCTTTAGgttggcaatattctctctgtacctgctatctgtctctcatatagtgctttttacttatttttatcttcgttttttttcag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211490682|gb|FL280129.1|FL280129
EST:     GAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAG                         GGGAACAATTAGATATGCGAGTGTCCATGCTCATTTGGGGCGCACTGGTAG
genomic: GAGAATAATGGTCATCATGTTGATTATGATCAACGGCCTGATATCTTTAGgttggttata ... ctttttgcagGGGAACAATTAGATATGCGAGTGTCCATGCTCATTTGGGGCGCACTGGTAG