Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattgggccacgaagttagttagccgttcaattccccaaccactcccacctatctctatttaaatcttcaccaatcttgtttgttattttgtttctgaatctgattccag

Basic information

species Zea mays
transcript GRMZM2G034083_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 9
TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattgggccacgaagttagttagccgttcaattccccaaccactcccacctatctctatttaaatcttcaccaatcttgtttgttattttgtttctgaatctgattccag
|||||||||||||||||| ||||| || ||||| || || || |||||||| ||||| ||| ||||||| |||||||||||||| |||||||||||||||| || ||  |        || | | |  ||||  | |||||||||||||||| | |  | ||| ||||||||| | ||||| ||  || | | | |||  |||||| |  |||
TGATGGCCGTAAGAGAGCTCTTCTCATTGGAGGTGGTATAGCGAACTTCACTGATGTCGCTGCTACATTCAGTGGCATCATTCGAGCTTTAAGAGAGAAGgcaagtttcg-------attggatcgttgttctgt-ccccaaccactcccacttgttgccattaaaatcttcatccatcttatt-attgtctggcttccaaatctggtggcag

upper sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 10
TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattgggccacgaagttagttagccgttcaattccccaaccactcccacctatctct---atttaaatcttcaccaatcttgtttgttattttgtttctgaatctgattccag
|||||||||||||||||||||||| || ||||| || || ||||||||||| ||||||||| | || || | ||| ||  | |||||| | |  ||||||||    |      | |  | | |||  |  ||     |        | | |      ||    ||| || | | |  |||  || ||| || |||| ||  |   | |  |  |||
TGATGGCCGTAAGAGAGCCCTTCTCATTGGAGGGGGTATTGCTAACTTCACTGATGTTGCTGCCACTTTCAATGGGATTGTCCGGGCTCTGAAGGAGAAGgtgtgat------caagttgaattattctctctggatcttggttgtttcaattctcatcctaaattcaagtttgcttcaacttttttttttctttttttcttt--ttttctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16916519|gb|BM072879.1|BM072879
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|67023264|gb|CO452013.1|CO452013
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|40303556|gb|CK347943.1|CK347943
EST:     CAGATGTTGCTTCTACATTTAGTGGCTTCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|28983142|gb|BQ538521.2|BQ538521
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|31357444|gb|CD441801.1|CD441801
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211020092|gb|FL063965.1|FL063965
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|67013475|gb|CO442224.1|CO442224
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211020101|gb|FL063974.1|FL063974
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCCGGAGAGGTG
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCC-GGAGAGGTG
EST: gi|60353272|gb|DN220245.1|DN220245
EST:     CAGATGTTGCTTTTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32866830|gb|CF006512.1|CF006512
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|16927003|gb|BM080076.1|BM080076
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|18177201|gb|BM378411.1|BM378411
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|5361093|gb|AI795708.1|AI795708
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|60353107|gb|DN220080.1|DN220080
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|24769705|gb|CA404834.1|CA404834
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211020102|gb|FL063975.1|FL063975
EST:     CAGATGTTGCTTCTACATTTAGTGCCTTTATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32844872|gb|CD984553.1|CD984553
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|67025367|gb|CO454116.1|CO454116
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|5819356|gb|AI987562.1|AI987562
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|148947868|gb|EC893361.2|EC893361
EST:     CAGATGTTGCTTTTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32845129|gb|CD984810.1|CD984810
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|4217927|gb|AI391923.1|AI391923
EST:     ACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: ACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32844736|gb|CD984417.1|CD984417
EST:     CAGATGTTGCTTCTACATTTAGGGGCATCATCCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|5740100|gb|AI947790.1|AI947790
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211020103|gb|FL063976.1|FL063976
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211020091|gb|FL063964.1|FL063964
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|44901489|gb|CK828034.1|CK828034
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|148986292|gb|EE030027.2|EE030027
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGG
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGT-GG
EST: gi|6101966|gb|AW126436.1|AW126436
EST:     CAGATGTTCCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32844415|gb|CD984096.1|CD984096
EST:     CAGATATTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|18177874|gb|BM379084.1|BM379084
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|149008522|gb|EE040695.2|EE040695
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|18177582|gb|BM378792.1|BM378792
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|24768435|gb|CA403564.1|CA403564
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|78103680|gb|DV522108.1|DV522108
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|31353311|gb|CD437668.1|CD437668
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|13150060|gb|BG320382.1|BG320382
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|87156899|gb|DY401688.1|DY401688
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|37400570|gb|CF637640.1|CF637640
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|33103007|gb|CF062967.1|CF062967
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32844999|gb|CD984680.1|CD984680
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32919518|gb|CF024330.1|CF024330
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211133979|gb|FL063978.1|FL063978
EST:     CAGATGTTGCTTCTACATTTAGTGGCATMATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|31354936|gb|CD439293.1|CD439293
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32866831|gb|CF006513.1|CF006513
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|148951644|gb|EC897388.2|EC897388
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|33100657|gb|CF060617.1|CF060617
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32864487|gb|CF004169.1|CF004169
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGA
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGA
EST: gi|37387167|gb|CF630776.1|CF630776
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|60339101|gb|DN206074.1|DN206074
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|33942317|gb|CF348917.1|CF348917
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|67042517|gb|CO468772.1|CO468772
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTANAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|67022701|gb|CO451450.1|CO451450
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|149000524|gb|EE037707.2|EE037707
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|60350340|gb|DN217313.1|DN217313
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|32936205|gb|CF041017.1|CF041017
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|44681881|gb|CK786929.1|CK786929
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|14245199|gb|BG873781.1|BG873781
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|5706332|gb|AI942108.1|AI942108
EST:     CAGATGTTGCTTTTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|6827666|gb|AW331309.1|AW331309
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|89763369|gb|DY690597.1|DY690597
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|13381606|gb|BG458386.1|BG458386
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|37401585|gb|CF638160.1|CF638160
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|211219075|gb|FL476018.1|FL476018
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
EST: gi|67016541|gb|CO445290.1|CO445290
EST:     CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAG                         GAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT
genomic: CAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 262

TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGTCCGAACTACCAAACTGGACTCGCCAAAATGCGCACCCTAGGCGCCGAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 559

TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGTCCGAACTACCAAACTGGACTCGCCAAAATGCGCACCCTAGGCGCCGAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 608

TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGTCCGAACTACCAAACTGGACTCGCCAAAATGCGCACCCTAGGCGCCGAAC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 673

TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattggg ... ctgattccagGAGTCCAAATTAAAGGCTGCAAGGATGAACATTTATGTCCGGAGAGGTGGTCCGAACTACCAAACTGGACTCGCCAAAATGCGCACCCTAGGCGCCGAAC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATGGCCGTAAGAGAGCCCTTCTAATCGGAGGAGGAATCGCTAACTTCACAGATGTTGCTTCTACATTTAGTGGCATCATTCGGGCTTTAAGAGAGAAGgtaaattgggccacgaagttagttagccgttcaattccccaaccactcccacctatctctatttaaatcttcaccaatcttgtttgttattttgtttctgaatctgattccag

- - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA