1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcaggtccttatggatcccgataccttctccctccaaatatggtttcagcattgctcaatgttcactgatcagtcacggctagctagcttcttt...
species | Zea mays |
transcript | GRMZM2G033526_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|60395622|gb|DN228492.1|DN228492
genomic: AACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|60356976|gb|DN223949.1|DN223949
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG AATGAGGACTTCTCCGCAAGCCAGCTAAGTAAAATGTTCGGATCTCATGCAEST: gi|31357830|gb|CD442187.1|CD442187
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacagAATGAGGACTTCTCCCCAAGCCAGCTAAGTAAAATGTTCGGATCTCATGCA
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|76287860|gb|DV027428.1|DV027428
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|60355637|gb|DN222610.1|DN222610
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|24765370|gb|CA400529.1|CA400529
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG GEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacag-
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG GEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacag-
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG GEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacag-
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG GEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacag-
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG GEST: gi|60341691|gb|DN208664.1|DN208664
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacag-
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAG GEST: gi|60397119|gb|DN229938.1|DN229938
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcag ... gggtctacag-
EST: CAGCCTTTATAACCCAATTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAGEST: gi|60338482|gb|DN205455.1|DN205455
genomic: CAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
EST: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGGGTCTACAG
genomic: CCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCT-------G-C-ACAGgtatgatcag ... gg
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCACTAAAGGCAGTCAAGGTGATGCACACTGTGGCACTCAGAACAGAATCCAGCCTTTATAACCCAACTACTTCTCCTAGTCTTGTTGCATCTGCACAGgtatgatcaggtccttatggatcccgataccttctccctccaaatatggtttcagcattgctcaatgttcactgatcagtcacggctagctagcttcttt
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