1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGAAGGTGGTGCGACTTGGGCCTTTGATGTTGGTAGTCAATCTATGACGTGTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAGgtaaatgattctgttattgcttgtcctttcaactcattattgtcaatgtatgcatattgctaatggtgttgcctgtatag
species | Zea mays |
transcript | GRMZM2G031656_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAG ATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAAEST: gi|50326100|gb|CO521226.1|CO521226
genomic: AGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAGgtaaatgatt ... gcctgtatagATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAA
EST: GTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAG ATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAAEST: gi|40335493|gb|CK369563.1|CK369563
genomic: GTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAGgtaaatgatt ... gcctgtatagATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAA
EST: GTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAG ATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAAEST: gi|109637277|gb|EC590822.1|EC590822
genomic: GTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAGgtaaatgatt ... gcctgtatagATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAA
EST: GTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAG ATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAA
genomic: GTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAGgtaaatgatt ... gcctgtatagATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTTATTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAAGGTGGTGCGACTTGGGCCTTTGATGTTGGTAGTCAATCTATGACGTGTCCAATCATTGTTGAGGATCTTGATCGGCCTCGTCAGATGCTTGTGGAGgtaaatgattctgttattgcttgtcctttcaactcattattgtcaatgtatgcatattgctaatggtgttgcctgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG