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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaaatattatcaatcacacctttttgtctgtagcgagtatcctttccttatcctttttcttgttccaaatacaaagctgcactatctcaatct...

Basic information

species Zea mays
transcript GRMZM2G031572_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os10g36760.1 (Oryza sativa), 5'ss of exon 9
CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaaatattatcaatcacacctttttgtctgtagcgagtatcctttccttatcctttttcttgttccaaatacaaagctgcactatctcaatct----------------------------------------------------
|||||||  ||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||||  ||||||| ||||| |||||| ||||  || | ||  ||| |    | |  |  | |    |||| || |||||||  |||   | | | |  || ||  || | || | ||||  |                                                    
CATATAGGTTATGGTGGTACCAAGTTTGCAGTGAAGTTGCATATTTCCAAGTGGCTCCAAAAAATGATAGTGTCCGTTCTGCAAAGATTGACACAAGgttactagatctactttcc-tcaaataaatattccactggaagctatc-ttaccttatcgatttagatctgctatctataat-cttctctttttcaagatgtgactatgcttctagatattgtatttatataagttcctcttttctttctag

upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT4G36195.3 (Arabidopsis thaliana), 5'ss of exon 9
---CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaaatattatcaatcacacctttttgtctgtagcgagtatcctt-tccttatcctttttcttgttccaaatacaaagctgcactatctcaatct
   || |||| || ||||||| ||||||||||| ||| || ||||||||||| ||||||||   |||||||||  | || || |   | ||| | ||   ||    | |      | |  | |  | |   | | |  |  |  |||  || |  |  | |||    || ||  || |  | ||                 
GTGCAGATAGGCTTTGGTGGTTCCAAGTTTGCACTGAAGTGGCATATTTCCAAGTGGCACCTGCAAACGATAGCATCCGGTCTCATCAAATCAATACAGAgtacacacagtcccaagcttttatccataacttttttcatggtttatatttattgtcctgcttacgtttcttttaatttgatag-----------------

upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv04s0023g03020.t01 (Vitis vinifera), 5'ss of exon 8
---CATATAGACTATGGTGGTACCAAGTTTGCAGTGAGGTTGCATATTTCCAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaaatattatcaatcacacctttttgtctgtagcgagtatcctttccttatcctttttcttgttccaaatacaaagctgcactatctcaatct----------------------------------------------------------------------------------
   |  || |  | ||||||| ||||||||||| ||| |||||||  ||||||||||||||   | | |||||  | || ||  || ||||  | || | ||           |  ||   |||  ||||  || | |  |   |     || |  | | | ||| || |   |  || || |||     ||    || |                                                                                  
CATCTGATCGGTTGTGGTGGTTCCAAGTTTGCACTGAAGTTGCATTCTTCCAGGTGGCACCCTCAGATGATAGCATGCGCTCTTCAGAGATTAATACAAAgt--------gcgtcttcg--cacctctttacgtgtttcacagtttctacttacccaacttcttttttatattat-taaaatgctatggcatgattatttgtgagttataagtatttggttttgcttactttactcttttgtacatgtatgattatacaaattggttgctcatatgtggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191456|gb|FL473730.1|FL473730
EST:     CCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAG                         GTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
genomic: CCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaa ... ttgtttctagGTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
EST: gi|91877512|gb|EB407469.1|EB407469
EST:     CAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAG                         GTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
genomic: CAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaa ... ttgtttctagGTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
EST: gi|67038480|gb|CO464800.1|CO464800
EST:     AGGTGGCACCNNNNNNNCGATAGTGTTCGTTCCCCAAAGATCGACACGAG                         GTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
genomic: AGGTGGCACC-AAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaa ... ttgtttctagGTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
EST: gi|31355151|gb|CD439508.1|CD439508
EST:     CAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAG                         GTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA
genomic: CAGGTGGCACCAAAAAACGATAGTGTTCGTTCCCCAAAGATCGACACGAGgttagtagaa ... ttgtttctagGTACCATTTGGACTTGTGCAGAAATGTTTTCGGCGAAGGAGTCTACCCTGA