Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatatcttatgaacttcttttgccgttggtttatgagtgattttccagacacgtactttttgacttgaatctagactctagaggagtacttgttt...

Basic information

species Zea mays
transcript GRMZM2G031107_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 9
TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatatcttatgaacttcttttgccgttggtttatgagtgattttccagacacgtactttttgacttgaatctagact-ctagaggagtacttgttt
 |||||||||||||||||||||||||| ||||||||||||||||||| ||||        |    | | | |||    |   ||  |    |  |     ||| |  || |  |  ||| |   | | | |  |   |
CATCATTCGTGATATCATTCAGAACCATTTGTTGCAGgtaaatatat-ttatttttggtatgcagcatagttttccatgcacttgccttttctaggggagttttatgtgcactttcacttcccaatgtgaatctacat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|111146774|gb|EE258268.1|EE258268
EST:     TATCATTCGTGATATCATTCAAAACCACTTGTTGCAG                         GTCTTCTGTTTGGTG
genomic: TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatat ... aattttgcagGTCTTCTGTTTGGTG
EST: gi|60672339|gb|DN475101.1|DN475101
EST:     TATCATTCGTGATATCATTCAAAACCACTTGTTGCAG                         GTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCCGAGCA
genomic: TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatat ... aattttgcagGTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCC-GAGCA
EST: gi|18661166|gb|BM501251.1|BM501251
EST:     TATCATTCGTGATATCATTCAGAACCACTTGTTGCAG                         GTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCGAGCAC
genomic: TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatat ... aattttgcagGTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCGAGCAC
EST: gi|76281884|gb|DV021452.1|DV021452
EST:     TATCATTCGTGATATCATTCAGAACCACTTGTTGCAG                         GTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCGAGCAC
genomic: TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatat ... aattttgcagGTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCGAGCAC
EST: gi|78109019|gb|DV527436.1|DV527436
EST:     TATCATTCGTGATATCATTCAGAACCACTTGTTGCAG                         GTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCGAGCAC
genomic: TATCATTCGTGATATCATTCAGAACCACTTGTTGCAGgtaaatatat ... aattttgcagGTCTTCTGTTTGGTGGCTATGGAAAAGCCTGTCTCTCTTAAACCCGAGCAC