1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgctcttctggaatagaactgaattgtggtcagatccatatactagcttgtaggttgaactagtttatttagtgatgtatctgtgatttttagggtattgtgttactctagaatactggatcacttactattttagttgcttaagtatttataattgcctgaaaatatgtttgcatcag
species | Zea mays |
transcript | GRMZM2G030902_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGEST: gi|149096474|gb|EE182216.2|EE182216
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATG
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGA-GATGTAAGATACCEST: gi|211138007|gb|FL213712.1|FL213712
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACC
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGEST: gi|21432115|gb|BQ547605.1|BQ547605
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGG
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGTEST: gi|32847027|gb|CD986708.1|CD986708
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGTEST: gi|26558086|gb|CA830321.1|CA830321
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
EST: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAG GAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
genomic: CACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgct ... tttgcatcagGAGGAAGATGTAAGATACCCCCCGAGTAGACCATCTCAGGGTGGCTATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTCTGTGGACAGCATCATGCAAGAGTCACATGAGCTTGATGGCACAACAGTAGTTGTTGATCGCGCGACTCCGAAGgtactttgctcttctggaatagaactgaattgtggtcagatccatatactagcttgtaggttgaactagtttatttagtgatgtatctgtgatttttagggtattgtgttactctagaatactggatcacttactattttagttgcttaagtatttataattgcctgaaaatatgtttgcatcag
- - - - - - - - - - - - - - - - GAGCTT