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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacattttgttggagccatcgacttggcgttttatgtgctagctgctaaatcatctttggtaatcacacacgtgcctcctgctacag

Basic information

species Zea mays
transcript GRMZM2G030784_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g05490.2 (Oryza sativa), 5'ss of exon 6
---------------------GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacattttgttggagccatcgacttggcgttttatgtgctagctgc-taaat-catctttggtaatcacacacgtgcctcctgc-tacag-----------------------
                     ||||| |    ||||||| | |||||     | |||| |||  | |||||||||||||| || ||||||||||| ||||||| | |  |   ||        | ||     |  |||| |   |   |||  || | || ||| ||  |  ||   | ||   ||||   |                          
TGGTTTGTATTATTGTATCAGGTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatctacagtatattttcttgaacaaacactttacg-attgattgcacaagtgcaccttaggcgacaactgtcctggtgcctggacatgattgtttacatgattttgctacag

upper sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g05490.1 (Oryza sativa), 5'ss of exon 7
GTGCACGCCTCCCTGAGGGATTGGCTAAAGACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacattttgttggagccatcgacttggcgttttatgtgctagctgc-taaat-catctttggtaatcacacacgtgcctcctgctacag-------------------------
||||| |    ||||||| | |||||     | |||| |||  | |||||||||||||| || ||||||||||| ||||||| | |  |   ||        | ||     |  |||| |   |   |||  || | || ||| ||  |  ||   | ||   ||||  |||                          
GTGCATGATGGCCTGAGGAAGTGGCTCGCTGCTAATGTCAGTGCAGAGGTTGCTGAATCAACAAGGATCATCTATGGAGgtataaatctacagtatattttcttgaacaaacactttacg-attgattgcacaagtgcaccttaggcgacaactgtcctggtgcctgg-acatgattgtttacatgattttgctacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71325325|gb|DR799341.1|DR799341
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|19437215|gb|BM953625.1|BM953625
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|213178228|gb|FM191284.1|FM191284
EST:     GACCAATGCCAGCCCTNNNNNNNCTGAATCTACTANNATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCNNNGAGCTAGCAGCACAGC
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGC
EST: gi|71323015|gb|DR798174.1|DR798174
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGTCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|67026065|gb|CO454814.1|CO454814
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|67024324|gb|CO453073.1|CO453073
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|71433477|gb|DR814527.1|DR814527
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|31355717|gb|CD440074.1|CD440074
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|67021074|gb|CO449823.1|CO449823
EST:     CCAATGCCAGCCCCTGAG-TTGCTGAATCTACTANGATCATCTACGGGAG                         -CTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCAC
genomic: CCAATGCCAGCCC-TGAGGTTGCTGAATCTACTAGGATCATCTACGG-AGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCAC
EST: gi|67034586|gb|CO463136.1|CO463136
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTANGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCNAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|67016932|gb|CO445681.1|CO445681
EST:     ACCAATGCCAGCCCTTGAG-TTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTNACTGCTGCGAACTGCANAGAGCTAGCAGCACAGCCTGATGTCG
genomic: ACCAATGCCAGCCCT-GAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|84980759|gb|DW531108.1|DW531108
EST:     ACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACNGGAG                         -CTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAG
genomic: ACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTAC-GGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAG
EST: gi|211324557|gb|FL104648.1|FL104648
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAR                         GCTCTGTAACTGCTGCGAACTGCAAAG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAG
EST: gi|38502719|gb|CF972579.1|CF972579
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAGGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|38502545|gb|CF972405.1|CF972405
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAA-AGCTACCAGCACAGCCTGATGTC
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTC
EST: gi|67012349|gb|CO441098.1|CO441098
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTACCAGCACAGCCTGATGTCA
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|211405979|gb|FL414494.1|FL414494
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAA-GAGCTAGCAGCACAGCCTG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTG
EST: gi|18384965|gb|BM418164.1|BM418164
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGAT
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGAT
EST: gi|83278900|gb|DV942908.1|DV942908
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTTACTGCTGCGAACTGCAAAGAGCTA
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTA
EST: gi|67017841|gb|CO446590.1|CO446590
EST:     ACCAATGCCAGCCCCTGAG-TTGCTGAATCTACTANGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: ACCAATGCCAGCCC-TGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|31350868|gb|CD435225.1|CD435225
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|31355497|gb|CD439854.1|CD439854
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|29544034|gb|CB604414.1|CB604414
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|67020170|gb|CO448919.1|CO448919
EST:     ACCAATGCCAGCCCCTGAGGT-GCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGNTA-CTGCTGCGAACTGCANAGAGCTAGCAGCACAGCCTGATGTC
genomic: ACCAATGCCAGCCC-TGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTG-TAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTC
EST: gi|67020068|gb|CO448817.1|CO448817
EST:     CCAATGCCAGCCCTGNAG-TTGCTGAATCTACTANGATCATCTACGGGAG                         -CTCTGTTACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTC
genomic: CCAATGCCAGCCCTG-AGGTTGCTGAATCTACTAGGATCATCTACGG-AGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTC
EST: gi|31354917|gb|CD439274.1|CD439274
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|18384001|gb|BM417201.1|BM417201
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGNAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGAT
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGAT
EST: gi|71332087|gb|DR802949.1|DR802949
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|93283118|gb|EB675382.1|EB675382
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACT
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACT
EST: gi|67035472|gb|CO464005.1|CO464005
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|31355762|gb|CD440119.1|CD440119
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAG                         GCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTGTAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTCG
EST: gi|67024408|gb|CO453157.1|CO453157
EST:     GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTANGATCATCTACGGAG                         GCTCTGNTA-CTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTC
genomic: GACCAATGCCAGCCCTGAGGTTGCTGAATCTACTAGGATCATCTACGGAGgtacatacat ... cctgctacagGCTCTG-TAACTGCTGCGAACTGCAAAGAGCTAGCAGCACAGCCTGATGTC