1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCTCTTGGTGGGAAGACATTTAAAATGAAATTTGGACATCATGGCGGGAATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcctacctcttacttttttatgcttgatgttggtcatgtctgttaaaaaaaccaacctaggaggaactaggcatctttgaaattaagagagaaa...
species | Zea mays |
transcript | GRMZM2G029573_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG ACCCATATCTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|71760287|gb|DR958224.1|DR958224
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|32845426|gb|CD985107.1|CD985107
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|211106984|gb|FL115271.1|FL115271
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|37401297|gb|CF638011.1|CF638011
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|211518595|gb|FL052563.1|FL052563
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTWEST: gi|33101065|gb|CF061025.1|CF061025
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|6342748|gb|AW165572.1|AW165572
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|67018136|gb|CO446885.1|CO446885
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|211038354|gb|FL445366.1|FL445366
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|32844104|gb|CD983785.1|CD983785
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|60343079|gb|DN210052.1|DN210052
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|31356811|gb|CD441168.1|CD441168
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|6012497|gb|AW061934.1|AW061934
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|88751312|gb|DY535453.1|DY535453
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|71764309|gb|DR962246.1|DR962246
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: CATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|6445511|gb|AW179429.1|AW179429
genomic: CATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGEST: gi|32844356|gb|CD984037.1|CD984037
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAG
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTAEST: gi|37379091|gb|CF626275.1|CF626275
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACTTAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAATAGTAEST: gi|211287671|gb|FL254549.1|FL254549
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
EST: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAG AACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAATGAGCAAAAGTA
genomic: ATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcct ... ttccctgtagAACCATAACTACGCAGTTGACCCAGAATCACTCCCAGAAGGAGCAAAAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTCTTGGTGGGAAGACATTTAAAATGAAATTTGGACATCATGGCGGGAATCACCCTGTCTGTGATCTCCGTAGTGGACGTGTAGACATAAGTGCACAGgtttgttcctacctcttacttttttatgcttgatgttggtcatgtctgttaaaaaaaccaacctaggaggaactaggcatctttgaaattaagagagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA