1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacattgctaccttgcagcttcttcttcgctattatttatgtcataaaaagagatctaactgggacactttttttctcctttgaaag
species | Zea mays |
transcript | GRMZM2G029566_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|149099313|gb|EE185349.2|EE185349
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|31355627|gb|CD439984.1|CD439984
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GTCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|32851376|gb|CD991057.1|CD991057
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|148929744|gb|EC876669.2|EC876669
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|29545139|gb|CB605317.1|CB605317
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: CACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|211248919|gb|FL466732.1|FL466732
genomic: CACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|71328227|gb|DR800747.1|DR800747
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|78124352|gb|DV542736.1|DV542736
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|60346412|gb|DN213385.1|DN213385
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|83278342|gb|DV942350.1|DV942350
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: AGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|4730752|gb|AI649918.1|AI649918
genomic: AGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|211273143|gb|FL031466.1|FL031466
genomic: TTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: ATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|211059340|gb|FL474462.1|FL474462
genomic: ATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|91052882|gb|EB163300.1|EB163300
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|211273141|gb|FL031464.1|FL031464
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|149042086|gb|EE047064.2|EE047064
genomic: TTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|211273140|gb|FL031463.1|FL031463
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|148946153|gb|EC891447.2|EC891447
genomic: TTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|86465953|gb|DY232326.1|DY232326
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|211228559|gb|FL433551.1|FL433551
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: CGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACTEST: gi|149076832|gb|EE165487.2|EE165487
genomic: CGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
EST: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAA GCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
genomic: TACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacatt ... cctttgaaagGCCTGGATTAAGCCGAAAGATCAAAATGACGCATCAATTGTCACAAAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCCGAGCCTTTACCGTACTTAGCCGAAAAGAATCACATAAATTATGACATTCCTCTTGAAgtatgacattgctaccttgcagcttcttcttcgctattatttatgtcataaaaagagatctaactgggacactttttttctcctttgaaag
- - - - - - - - - - - - - - AAAGAA