1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CTCCAAGTACCCCGTAGGTCAATCCATTAGCTCCCCGGTGCTTGGTTGGAAAAAATGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAGgtttgacaatggcactcagaatgaccatattaccttacgggcgtgtttgagagcaagtggataggaggttgctattcaaaattgaatagaaggatatttttagctccttcaatccccttctcccgaacaaaccctaccctacctgattagtgagtgattagtctccttgatgttgcag
species | Zea mays |
transcript | GRMZM2G024245_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAAATTGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAG TGAGCTCGGAGACGCCAGTACAGATAATGCACGTTAGGCEST: gi|87157275|gb|DY402064.1|DY402064
genomic: AAAAATGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAGgtttgacaat ... gatgttgcagTGAGCTCGGAGACGACAGTACAGATAATGCACGTTAGGC
EST: AAAATTGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAG TGAGCTCGGAGACGACAGTACAGATAATGCACGTTAGGCGACGGGCTTCTCEST: gi|33097127|gb|CF057087.1|CF057087
genomic: AAAAATGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAGgtttgacaat ... gatgttgcagTGAGCTCGGAGACGACAGTACAGATAATGCACGTTAGGCGACGGGCTTCTC
EST: AAAATTGTAATGGAGATCAGCGCTAGCTATCTTGACGGCCCAACTGACAG TGAGCTCGGAGACGACAGTACAGATAATGCACGTTAGGCGACGGGCTTCTC
genomic: AAAAATGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAGgtttgacaat ... gatgttgcagTGAGCTCGGAGACGACAGTACAGATAATGCACGTTAGGCGACGGGCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCCAAGTACCCCGTAGGTCAATCCATTAGCTCCCCGGTGCTTGGTTGGAAAAAATGTAATGGAGATCAGCGCTAGCTACCTTGACGGCCCAACTGACAGgtttgacaatggcactcagaatgaccatattaccttacgggcgtgtttgagagcaagtggataggaggttgctattcaaaattgaatagaaggatatttttagctccttcaatccccttctcccgaacaaaccctaccctacctgattagtgagtgattagtctccttgatgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA