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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctttctacattttgttacaatactctaagaaaactgttactgttgtgttactaatttactttttgtacattttatctttcag

Basic information

species Zea mays
transcript GRMZM2G024151_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g14860.3 (Oryza sativa), 5'ss of exon 9
GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctttctacattttgttacaatactctaagaaaactgttactgttgtgttactaatt-tactttttgtacattttatctttcag
||||| || || || |||||||| ||||||||||||||||| ||||| || || ||||| ||||| ||||| || |||||||||||||||||||||||||  || ||| ||||  || ||||   ||||| | || || |    | | |   || | |||   ||  | |   | ||||          
GTCCTTGGAACACCTACAAGGGAGGAAATTAAATGCATGAATCCAAACTATACCGAGTTCAAGTTTCCACAGATTAAAGCACACCCATGGCACAAGgtgca-aagtctatctat-ttctgttgttatactttcagcaatcgtccagtatcaggtgattaaccatatatgtaaaatatttag--------

upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 5'ss of exon 9
GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctt-tctacattttgttacaatact----ctaagaaaactgttactgttgtgttactaatttac--tttttgtacattttatctttcag-
||  | || || || ||  | || || || || |||||||| || || ||||| ||||| ||||| || |||||||| || |||||||||||||| ||          | |  |     ||||   ||  |     |  | |   |  | | |  |||    |     ||  | |||     | | | |  |  | 
GTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAAgtatgtggtctgtgtgaatgcactgttttcatcttgggctttggtagtgtagtccagaagtggagatgtacgaccgtgttttcgtgtgtgagcggtgggt

upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 5'ss of exon 8
GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctttctacattttgttacaatactctaagaaaactgttactgttgtgttactaatttactttttgtacattttatctttcag-----------------------------------------------------------------------------------------
||  | || || || ||  | || || || || |||||||| || || ||||||||||| ||||| ||||||||||| || ||||| |||||||| ||       | | |    ||  | | |    |  ||  |      | |  |  || | || |   |     |  |    | |  | |  | |                                                                                         
GTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAAgtatgttt-tttgtgcgaatgctatgatgtcatcctgggtgttgcggttgtagtgcggtagtggatgtgggtcagcctttctcgtgtagcggcattgttagttgcgtgcgtcgtggtttgttggatgttgggttttgacgacggtaaccggcgtttggtatggccgatgtgggaattgcag

upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 10
GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctttctacattttgttacaatactctaagaaaactgttactgttg-tgttactaatttactttttgtacattttatctttcag
||| | ||||| || ||  |||| ||||| ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || || |||||||||||    | | |  ||     |  | || |   ||||       ||||  || ||| |||  ||  || ||                       
GTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgta---agagcaatca----tccggtatatctctctct-----ctgtctctcttgatgtggctcgttgacag---------------------

upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 9
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 10
GTCCTCGGTACGCCAACAAGGGAAGAAATTAAATGCATGAACCCAAATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaatctttctacattttgttacaatactctaagaaaactgttactgttg-tgttactaatttactttttgtacattttatctttcag
||| | ||||| || ||  | || ||||| ||||||||||| ||||| ||||| |||||||||||||| || || ||||| || || |||||||||||    | | |  ||     |  | || |   ||||       ||||  || ||| |||  ||  || ||                       
GTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAGgta---agagcaatca----tccggtatatctctctct-----ctgtctctcttgatgtggctcgttgacag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338696|gb|DN205669.1|DN205669
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60337200|gb|DN204173.1|DN204173
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|6020932|gb|AW065860.1|AW065860
EST:     TAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGNTGATCTGGTCTCTCGGCTA
genomic: TAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|83279374|gb|DV943382.1|DV943382
EST:     GTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: GTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60349350|gb|DN216323.1|DN216323
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60340745|gb|DN207718.1|DN207718
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60358044|gb|DN225017.1|DN225017
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60344051|gb|DN211024.1|DN211024
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60357663|gb|DN224636.1|DN224636
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|61117968|gb|DN558929.1|DN558929
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|211161694|gb|FL418712.1|FL418712
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|61117965|gb|DN558926.1|DN558926
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60395743|gb|DN228613.1|DN228613
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|30032096|gb|CB833947.1|CB833947
EST:     AGAGTTTAAGTTCCCCCAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: AGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60338887|gb|DN205860.1|DN205860
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|4967195|gb|AI691889.1|AI691889
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|61117966|gb|DN558927.1|DN558927
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|33092884|gb|CF052878.1|CF052878
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCTTGTCTGAAGCTGTTGATCTGGTCTCTCGGCT
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGC-CGCCAGAAGCTGTTGATCTGGTCTCTCGGCT
EST: gi|60394497|gb|DN227367.1|DN227367
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60396840|gb|DN229664.1|DN229664
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60395783|gb|DN228653.1|DN228653
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60350467|gb|DN217440.1|DN217440
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|33097248|gb|CF057208.1|CF057208
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|211429305|gb|FL416846.1|FL416846
EST:     TTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: TTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|78544196|gb|DV621694.1|DV621694
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|60346367|gb|DN213340.1|DN213340
EST:     ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: ATTACACAGAGTTTAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|33104403|gb|CF064363.1|CF064363
EST:     TAAGTTCCCACAAATCAAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: TAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
EST: gi|32827595|gb|CD967273.1|CD967273
EST:     TAAGTTCCCACAAATCGAAGCACACCCATGGCACAAG                         GTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA
genomic: TAAGTTCCCACAAATCAAAGCACACCCATGGCACAAGgtgctcaaat ... tatctttcagGTATTCCACAAAAGGATGCCGCCAGAAGCTGTTGATCTGGTCTCTCGGCTA