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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACAGCTTTCACAGTTCAAGCCATTGTGGCTACCAACCTTATTGAAGAGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtcgacatgcctttttgtatatattgttcaatcttaggttcatttacagcactgataaatggctgtttaatatgaaag

Basic information

species Zea mays
transcript GRMZM2G023798_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G023798_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g04710.2 (Oryza sativa), 5'ss of exon 9
GGATACAGCTTTCACAGTTCAAGCCATTGTGGCTACCAACCTTATTGAAGAGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtc----gacatgcctttttgta----tatattgttcaatcttaggttcatttacagcactgataaatggctgtttaatatgaaag
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GGACACAGCTTTCACAGTTCAAGCTATAGTGGCTACTGGCCTCATTGAAGAATTTGGTCCTACTCTTAAACTAGCACATGGCTACATAAAGAAAACGCAGgtgcatgcctcatgcatgttcccttatacgattatactaatcaacatttcaagccatctcattacttacctgtggct-tttatcctgaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21331674|gb|BQ487055.1|BQ487055
EST:     AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAG                         GTTCTTGATGACTGCCCTG
genomic: AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtcga ... aatatgaaagGTTCTTGATGACTGCCCTG
EST: gi|23199794|gb|BU582359.1|BU582359
EST:     AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAG                         GTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
genomic: AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtcga ... aatatgaaagGTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
EST: gi|18659473|gb|BM500356.1|BM500356
EST:     GTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAG                         GTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
genomic: GTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtcga ... aatatgaaagGTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
EST: gi|87156285|gb|DY401074.1|DY401074
EST:     AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAG                         GTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
genomic: AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtcga ... aatatgaaagGTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
EST: gi|26560142|gb|CA832377.1|CA832377
EST:     AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAG                         GTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT
genomic: AGTTTGGTCCTACCCTTAAACTAGCACACAACTATATCAAGAATTCACAGgtacagtcga ... aatatgaaagGTTCTTGATGACTGCCCTGGTGATCTGAATGACTGGTACCGCCACACATCT