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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCTGGACAGGAATTCCCTTTCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACTgtaagtcagttcaagagttgcacaatactgtacttagccgctgtgcattttagtgtacgagagggtacagttacactcaacacggcatgcttatgcttttcag

Basic information

species Zea mays
transcript GRMZM2G023715_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148933999|gb|EC878000.2|EC878000
EST:     TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACT                         CAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
genomic: TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACTgtaagtcagt ... tgcttttcagCAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
EST: gi|76291830|gb|DV031398.1|DV031398
EST:     TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACT                         CAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
genomic: TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACTgtaagtcagt ... tgcttttcagCAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
EST: gi|71768120|gb|DR966057.1|DR966057
EST:     TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACT                         CAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
genomic: TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACTgtaagtcagt ... tgcttttcagCAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
EST: gi|148981983|gb|EE028043.2|EE028043
EST:     TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACT                         CAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
genomic: TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACTgtaagtcagt ... tgcttttcagCAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
EST: gi|148989785|gb|EE031798.2|EE031798
EST:     TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACT                         CAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT
genomic: TCTGGCCAAGTACCTTTAAATCTGAATAACCTCACCAAAGTCATTGAACTgtaagtcagt ... tgcttttcagCAACTTGGCCAACAACCAGCTCACCGGAACATTGCCAGATCTAACTAGGAT