1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGGgtatgtctagtagttgatttacattatcatataagttgacaaatggattgatctcacctctgtttgtgtctctgtccatcag
species | Zea mays |
transcript | GRMZM2G022777_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGG ATTCTTGTACCGCTTCCTGAAGGTGAAGCAAGGCAAGCGATGTTTGAGGAAEST: gi|7137663|gb|AW499208.1|AW499208
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGGgtatgtctag ... tgtccatcagATTCTTGTACCGCTTCCTGAAGGTGAAGCAAGGCAAGCGATGTTTGAGGAA
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGG ATTCTTGTACCGCTTCCTGAAGGTGAAGCAAGGCAAGCGATGTTTGAGGAAEST: gi|9733829|gb|BE512581.1|BE512581
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGGgtatgtctag ... tgtccatcagATTCTTGTACCGCTTCCTGAAGGTGAAGCAAGGCAAGCGATGTTTGAGGAA
EST: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGT ATTCTTGTACCGCTTCCTGAAGGTGAAGCAAGGCAAGCGATGCTTGAGGAA
genomic: ATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGGgtatgtctag ... tgtccatcagATTCTTGTACCGCTTCCTGAAGGTGAAGCAAGGCAAGCGATGTTTGAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGTTTGACAAAGACAAACGACTTGGTATTTGTACTTGCAGCTACAAATCTTCCCTGGGAATTGGATGCAGCCATGCTCCGCCGGCTTGAGAAGCGGgtatgtctagtagttgatttacattatcatataagttgacaaatggattgatctcacctctgtttgtgtctctgtccatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC