1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCCAGACTATGGTTCTCGGCGAATGCCAGGTCGTAGACGTTTCGAGGATGAATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagttgtgctcatgattttcagtcttactttaaccaaacttctagtatttacgtttatctatttgcgctgcacattcag
species | Zea mays |
transcript | GRMZM2G019879_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAG TCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGTEST: gi|44900995|gb|CK827540.1|CK827540
genomic: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagt ... gcacattcagTCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGT
EST: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAG TCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGTEST: gi|211191465|gb|FL364436.1|FL364436
genomic: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagt ... gcacattcagTCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGT
EST: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAG TCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGTEST: gi|37396701|gb|CF635644.1|CF635644
genomic: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagt ... gcacattcagTCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGT
EST: AATTGGAGGCTGTAGCACTAGCTGAGAGTCGTATCATCAACGCGAAGAAG TCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGTEST: gi|211302278|gb|FL347320.1|FL347320
genomic: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagt ... gcacattcagTCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGT
EST: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAG TCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGT
genomic: AATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagt ... gcacattcagTCAAATATGAGCAGAAATGTTCCCCGCAAACCACCGTACCCTCCTGCTCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCAGACTATGGTTCTCGGCGAATGCCAGGTCGTAGACGTTTCGAGGATGAATTGGAGGCTGAAGCACTAGCTGAGAGGCGTATCATCAACGCGAAGAAGgcaagagagttgtgctcatgattttcagtcttactttaaccaaacttctagtatttacgtttatctatttgcgctgcacattcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG