1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGGTTTCAACATCATGTGTCAAAGTTGGAGATGAAAACGAGATACTATTCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcgagattcgctgaccaataacagttccttgatttcctgatgactttttcagtgcatctaatggtgcgtatatag
species | Zea mays |
transcript | GRMZM2G019437_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|50332368|gb|CO527494.1|CO527494
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|211506064|gb|FL476293.1|FL476293
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTWACAAAGGCACAAGATTTTEST: gi|76289468|gb|DV029036.1|DV029036
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|67022687|gb|CO451436.1|CO451436
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|67023553|gb|CO452302.1|CO452302
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGNCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|5030649|gb|AI714843.1|AI714843
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|148952756|gb|EC898738.2|EC898738
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTTTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTTGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|149076152|gb|EE164741.2|EE164741
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTTEST: gi|71420929|gb|DR805239.1|DR805239
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
EST: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAG GTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
genomic: TCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcg ... gcgtatatagGTGTTGGAGCTTCAACTCCCTGGAAAGAAAGTAACAAAGGCACAAGATTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGTTTCAACATCATGTGTCAAAGTTGGAGATGAAAACGAGATACTATTCTCTGGGAGCTCGTTGCTGATTCCTTGCAGTGGTTCGACCTGGCTCGAGgtatgtatcgagattcgctgaccaataacagttccttgatttcctgatgactttttcagtgcatctaatggtgcgtatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT