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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtttatttgccagactactcttgcagctaagttcaatacccagcataaatctgtacttgtctactaagttgcaccatgattgattgattactttattaatgaatcgtgtaatgattttgtacag

Basic information

species Zea mays
transcript GRMZM2G018697_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018697_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g62040.1 (Oryza sativa), 5'ss of exon 8
TGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagttt-atttgccagactactcttgcagctaagttcaatacccagcataaatctgtacttgtctactaagttgc-accatgatt-----gattgattactttattaatgaatcgtgtaatgattttgtacag
|| | ||||| ||||| || ||||||||||| |||||  |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||  | |||| |||| ||   | |  |   | |  |  ||  |   ||||  |||  |||    | ||   |    |   || ||| |        || |  | | | |||   | | ||||   || | ||| |||
TGCTAGATATTGAATGCTTCTCTTATCTTAATCGTGCTCTGGAGAGCCCATTATCACCAATTGTGATACTTGCGACAAATAGAGGAATATGTAATGTAAGgtaaacggtttgatttaccgctcgaagcactctgtcacattgcagtaccagagtaatactgcgtctatcagtttgtctattactatgctccttaaagttaacaagtcttttatatacttgtgt---gaatgtgtccag

upper sequence: GRMZM2G018697_T04 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g08170.1 (Oryza sativa), 5'ss of exon 8
TGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagttt-atttgccagacta--ctcttgcagctaagttcaatacccagcataaatctgtacttgtctactaagttgcaccatgattgattgattactttattaatgaatcgtgtaatgattttgtacag
|||| || || ||||| || ||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| || || ||||||||||| ||||||||  |||||| |||| |||| | |  | ||    ||||  ||  |   ||||  |||   |||  |||||   |   ||  |  |  ||    |  |||   | |||   | || ||| ||| || ||| |||
TGTTAGACATTGAATGCTTCTCTTATCTTAATCGTGCTTTGGAGAGCCCATTATCACCAATTGTGATACTTGCTACGAACAGAGGAATATGTAACGTAAGgtaaacagtttgatttaccagtcgaagcactctgcgctacattataataccagactaatcatgtgtttgtcagtttgttt--attaccatatgctccttaaagt-ttacaaagtcttgttatgcttgtgtccag

upper sequence: GRMZM2G018697_T04 (Zea mays), 5'ss of exon 2
lower sequence: Vv06s0004g02910.t01 (Vitis vinifera), 5'ss of exon 8
TGTTGGATATCGAATGTTTTTCTTATCTTAACCGTGCATTGGAGAGCCCATTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgta-ggcagtttatttgccagactactcttgcagctaagttcaatacccagcataaatctgtacttgtctactaagttgcaccatgattgattgattactttattaatgaatcgtgtaatgattttgtacag
|| ||||||| || |||||||| ||| | || |||||  | |||||| || | || ||||| || ||  | |||||||||||||||||||||||||||||||| |||| | ||  ||  | | |   |    | ||  |   ||||    | | ||||   ||| | |||  |      ||      ||  ||  || ||||   ||                         
TGCTGGATATGGAGTGTTTTTCATATTTGAATCGTGCTCTAGAGAGCTCACTGTCTCCAATAGTAATTTTCGCTACAAATAGGGGAATATGTAATGTAAGgtatggcattctacctgtgaaaatgaccaaataacttgg---aataggatgaaaaaat---tacctatcttttctaac-cattgcagtttttttttttcttttggaa-------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60340836|gb|DN207809.1|DN207809
EST:     TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: gi|22490622|gb|BU050545.1|BU050545
EST:     TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: gi|61118430|gb|DN559391.1|DN559391
EST:     TTATCACCAATTGTGATACTTGCTACGAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCAGTGGATCTTCTAAATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: gi|87152471|gb|DY397260.1|DY397260
EST:     TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: gi|61118429|gb|DN559390.1|DN559390
EST:     TTATCACCAATTGTGATACTTGCTACGAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCAGTGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: gi|31612366|gb|CD568988.1|CD568988
EST:     TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCGGNGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: gi|213174323|gb|FM191608.1|FM191608
EST:     TTATCACCAATTGTGATACTTGCTACGAATAGGGGAATATGTAATGTAAG                         AGGAACTGATATGACAAGTCCACATGGTATACCAGTGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG