Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag

Basic information

species Zea mays
transcript GRMZM2G018356_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 5'ss of exon 10
GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag
|||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||| | |||||||| ||||||| | ||||   |  ||||   | ||| ||||      | |  ||  |  | |||    |||| ||  | | |   |||  |   |  | ||  ||  || ||||                                                                                   
GCTTCCTAATGGGTGGTGGGTTTTTGGCCTTGACCAAGCTCTTCATGGTGACATTGATGTCTATCAGTTCAAGTTTTTTGCAGAGCTATGTCAACAAAAGgtaagtacattgcgtcatctttaggctattagcaa----attatttttgtggtgaatgctatggtcta-catttgtgaatttgttgtttcggttcttc--tagtgaa-----------------------------------------------------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 9
GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag
 || || ||  | |||||||||||||| ||||| | ||||||||||||||| |||||||| ||||| |||||||| ||| | ||  ||     | |||| |||| |    |||||| | |   |  | ||     |  | || |    ||  | || |    |    |||  | |   | | | || | || ||  | |  ||                                                                                       
ACTCCCTAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTACGGAACTGATAACAGAGAAAgtaaatattctttctgttttatcttttgtc--tcttcatttctaagaaatggtgaagt-acagaacaaatgtttgtgtactgcactgttagtttactaatcac---------------------------------------------------------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 6
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 9
-GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcattttctggtcttcgtg-gtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag
  || || ||  | |||||||||||||| ||||| | ||||||||||||||| |||||||| ||||| |||||||| ||| | ||  ||     | |||| |||| |    |  ||| |   | |  || |   || || | | || |  | |  |       || ||  | || |         | | |   | |  | | || |                                                                                      
AACTCCCAAAACGGTGGTGGGTTTTTGGGCTTGATCTAGCTCTTCATGGTGATATTGATGTGTACCAATTCAAGTTCTTTTCGGAACTGATAACAGAGAAagtaaatattctgcctgtttaccttttgtcttttcatttctatgaaatgaagtacagcacaaatgcttgtacagcactg------tttgttcacctttttattatt--------------------------------------------------------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 6
lower sequence: AT4G23000.1 (Arabidopsis thaliana), 5'ss of exon 9
GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttca---ttttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag
||| || || ||||||||||| |||||| | || | ||| ||||||||||| |||||||| ||||||||||| || ||| || | ||     |  ||||||||  ||||   |  |||    |||   |  | |  ||   |  |   | |  |  ||| |   |  |   ||     |    |  | | |    ||| |||                                                                                           
GCTACCTAAAGGATGGTGGGTGTTTGGTTTGGATCTAGCGCTTCATGGTGATATTGATGTGTACCAGTTCAATTTCTTTTCTAAATTAGTGAAGGAGAAGgtagattcaacatcatctttctttctcaggctaaatagactttgcggatgctatacaaaat--atattcccatcaactcgagctcttttcttcttttgttca-------------------------------------------------------------------------------------------

upper sequence: GRMZM2G018356_T02 (Zea mays), 5'ss of exon 6
lower sequence: PP1S72_100V6.1 (Physcomitrella patens), 5'ss of exon 8
GCTTCCCAATGGATGGTGGGTTTTTGGTCTTGACCAAGCTCTTCATGGTGACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagta-gcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcag
 |||||   ||| |||||| |||||||  |||| |||||||||||||||||||||||| | | ||||||||||| |||  | ||  |     || || | || | ||   |    |   ||  |  |   | ||  |  |  |   |||  |   |||   | || ||||  || | |  |   ||  ||| |||   || || ||                                                                                     
TCTTCCTTGTGGTTGGTGGATTTTTGGCTTTGATCAAGCTCTTCATGGTGACATTGATATCTTCCAGTTCAAGTATTTCACAGAAATCGTGAAAGAGCATgtgagtttgata---gaattttctctttctaacacgtaagcaagaatcaaat-gcattatttagtataatgttaaggatgtgtatcattaatctt--ccattattg-------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371169|gb|FL041573.1|FL041573
EST:     ACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAG                         GTCAGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAATTGGCTC
genomic: ACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcat ... aagtatgcagGTCGGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAACTGGCTC