1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTGTGAGTGTGAACAAGTACCTTGAAGCTAAGAAGCAGAAAATATCTGTTGGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAGgtatgatttggacttcatctaaacattttatttatgctgggagcaaaattacatttgtctctggttacag
species | Zea mays |
transcript | GRMZM2G017187_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAG GTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATCEST: gi|31612183|gb|CD568805.1|CD568805
genomic: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAGgtatgatttg ... ctggttacagGTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATC
EST: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAG GTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATCEST: gi|29946880|gb|CB816370.1|CB816370
genomic: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAGgtatgatttg ... ctggttacagGTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATC
EST: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAG GTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATCEST: gi|78074585|gb|DV503019.1|DV503019
genomic: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAGgtatgatttg ... ctggttacagGTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATC
EST: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAG GTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATC
genomic: GGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAGgtatgatttg ... ctggttacagGTTCAGCGGAACAATCATTGGCATCGGGAGTTTGCCGGCAATGTCAAAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTGAGTGTGAACAAGTACCTTGAAGCTAAGAAGCAGAAAATATCTGTTGGAATGAGGTTTAAGATGAGATTTGAAGGTGATGATGCTCCTGAAAGAAGgtatgatttggacttcatctaaacattttatttatgctgggagcaaaattacatttgtctctggttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG