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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatttaggatgcttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag

Basic information

species Zea mays
transcript GRMZM2G015989_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g01280.1 (Oryza sativa), 5'ss of exon 9
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatt--taggatgc-ttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag
| | ||||||| |||||||||| ||||||||| || ||||| |||||||| ||||||||||||||||||||||| ||||| |  | | |||||   |   | |||   ||||                  | | ||  |||| |  |||| ||| || ||||||  | ||    |   | ||||     |||| | ||||      
GTTGCTGAACAGGAATATGAGAAAGAAAAACTGAATGAGAGAATAGCTAAGCTCTCTGGTGGTGTTGCTGTCATCCAGgtga-tctcgatgtt---ctgcaattgaaccaatgc---------------acttgttaatgtactactaggctgcatttgcagaa-gataattgttgtgaaatgacgctacttgttatgtag-----

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA08G18760.1 (Glycine max), 5'ss of exon 8
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatttaggatgcttagcagaataaaaaaaacta-gaacatgatatgccttgctttgtattgtag
||| |||| ||||| ||||||| |||||| || || ||||| || |||||| | ||||||||||| ||||| || |||||||           | || |      |   ||| |   || |  ||||||      ||||   | |   | |  || ||   |     ||  |  | |||| ||||                   
GCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTGTCTGGTGGTGTGGCTGTGATACAGgtaa----------cagactc-----actgaaatgtggtaatatattagtt------tggtac-tctgcaaggtatatcaacttggggcaatttttgtacat-atatag-----------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G40110.1 (Glycine max), 5'ss of exon 8
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctc---ttggtgtatttaggatgcttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag
||| |||| ||||| ||||||| |||||| || || ||||| || |||||| | ||||||||||| |||||||| |||||||    |    | |||   || |    | | |||   |   | || | |   ||   ||||   ||||  |    |  | ||                                            
GCTGCTGAGCAAGAGTATGAGAAAGAAAAGCTGAATGAGAGAATTGCTAAATTATCTGGTGGTGTGGCTGTCATACAGgtaacagactcactgaaatggtaat-atgttagtttggtacgccgttgggtatatcaacttgggcaatttttgtacatgtgtag--------------------------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT3G13470.1 (Arabidopsis thaliana), 5'ss of exon 9
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaattttt-caaaaccttagttgcctct-tggtgtatttaggatgcttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag
    | || ||||| || ||||  |||||| |||| ||||| || || || ||||||||||| |||||||| |||||||||||    | |  | |     | || | |  |||| |   | |    | |    |   || | || |||   |  ||| ||   |    |||                                  
CAAGCGGAGCAAGACTACGAGAAGGAAAAATTAAATGAGAGAATTGCGAAGCTCTCTGGTGGAGTTGCTGTAATTCAGgtaaaa--tagtaatcacatggactttcttggatttgtatgatagaagaataagttaagtgatctaattaaagttttta-catcttggttaaag---------------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT1G55490.2 (Arabidopsis thaliana), 5'ss of exon 9
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatttaggatgcttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag
    | || ||||| || ||||  || ||||| || ||||| || || || ||||||||||| |||||||| ||||||||||||   ||  |   |    |||| |||   | |    ||    |  ||      |  |   || ||   | |  | |      |||                                    
CAAGCGGAGCAAGATTACGAGAAGGAGAAACTCAATGAGAGAATTGCAAAGCTCTCTGGTGGAGTTGCTGTGATTCAGgtaaactaaaaact---atttaagtttcctttgtctgattaagatgtgtttcagagatattaagttaagctcgttatgtattggttaaag-----------------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv06s0004g00240.t01 (Vitis vinifera), 5'ss of exon 9
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatttaggatgc-ttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag
||  | || |||||||||||||  |||||||| || || || || || ||| | || |||||||||||||| |||||||||||  |  | ||||    | ||||     ||||| | ||    ||  |     |     ||  |||| ||   |||       |   ||   | |||                           
GCAGCAGAGCAAGAATATGAGAAGGAAAAACTTAATGAAAGAATTGCAAAATTGTCAGGTGGTGTTGCTGTGATTCAGgtaaattctta-gttag--tccagttaa---aatttataaatgatttcatcattgc---aggtgcttagtatctattaattattcattgaacttttgaag--------------------------

upper sequence: GRMZM2G015989_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv09s0002g03930.t01 (Vitis vinifera), 5'ss of exon 8
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatttaggatgcttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag
||  | || || || ||||| | ||| || || || || || || || ||||| || |||||||||||||||||||||||||       | ||    | ||  | |   ||| |    |    || ||||     |||   |||  | | |  | |     |   |   ||||    |   | ||  ||||     |||  ||
GCAGCAGATCAGGACTATGAAAAAGAGAAGCTTAATGAAAGAATTGCAAAACTTTCAGGTGGTGTTGCTGTCATTCAGgtaattttttttttt----cttaaatac---aatgt----agctgttggttgatagatgga--attctgaaagtattgttcttttctacccactattttaatttttgtgttgc---acatt-cag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093495|gb|CF053489.1|CF053489
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67024753|gb|CO453502.1|CO453502
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|211490742|gb|FL282858.1|FL282858
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840618|gb|CD980299.1|CD980299
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840181|gb|CD979862.1|CD979862
EST:     AACTGAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAACTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32935097|gb|CF039909.1|CF039909
EST:     AACTAACCGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33093072|gb|CF053066.1|CF053066
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67018624|gb|CO447373.1|CO447373
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840587|gb|CD980268.1|CD980268
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|211161903|gb|FL325520.1|FL325520
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33099832|gb|CF059792.1|CF059792
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840153|gb|CD979834.1|CD979834
EST:     AACTAACCGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32933116|gb|CF037928.1|CF037928
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33091567|gb|CF051561.1|CF051561
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840911|gb|CD980592.1|CD980592
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32933836|gb|CF038648.1|CF038648
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|31356086|gb|CD440443.1|CD440443
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67018533|gb|CO447282.1|CO447282
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33095277|gb|CF055271.1|CF055271
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67021281|gb|CO450030.1|CO450030
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|26457560|gb|CA829143.1|CA829143
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840280|gb|CD979961.1|CD979961
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840621|gb|CD980302.1|CD980302
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840609|gb|CD980290.1|CD980290
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33094337|gb|CF054331.1|CF054331
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32934585|gb|CF039397.1|CF039397
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840466|gb|CD980147.1|CD980147
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67017327|gb|CO446076.1|CO446076
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|21891546|gb|BQ744759.1|BQ744759
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32841055|gb|CD980736.1|CD980736
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|78081967|gb|DV510379.1|DV510379
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67011543|gb|CO440292.1|CO440292
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|67022736|gb|CO451485.1|CO451485
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32936737|gb|CF041556.1|CF041556
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTC
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTC
EST: gi|29945491|gb|CB815666.1|CB815666
EST:     TCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: TCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|21760017|gb|BQ635558.1|BQ635558
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33100370|gb|CF060330.1|CF060330
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|211268018|gb|FL355151.1|FL355151
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32841445|gb|CD981126.1|CD981126
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|33095378|gb|CF055372.1|CF055372
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32840449|gb|CD980130.1|CD980130
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
EST: gi|32841470|gb|CD981151.1|CD981151
EST:     AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAG                         GTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG
genomic: AACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaacccca ... tgtattgtagGTAGGAGCACAGACAGAAACTGAGCTCAAGGAAAAGAAATTGAGGGTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTACTGAACAAGAATATGAGAGAGAAAAACTAAACGAGAGGATAGCTAAACTCTCTGGTGGTGTTGCTGTCATTCAGgtaaaccccaatgttaaaccctagttgcctcaatttttcaaaaccttagttgcctcttggtgtatttaggatgcttagcagaataaaaaaaactagaacatgatatgccttgctttgtattgtag

- - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG