1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCTATCAAACCAACTGGCCATATTCAAATACTTTATGGCAATCTTGCACCAGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAGgtgctttgttgcttctatctccaatccttggaagtctctgtattatgtgtggggtttaactgttatttggtaaatgtcag
species | Zea mays |
transcript | GRMZM2G014069_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAG GTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAGEST: gi|33095072|gb|CF055066.1|CF055066
genomic: AGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAGgtgctttgtt ... taaatgtcagGTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAG
EST: AGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAG GTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAGEST: gi|74234928|gb|DT642842.1|DT642842
genomic: AGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAGgtgctttgtt ... taaatgtcagGTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAG
EST: AGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAG GTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAGEST: gi|211085449|gb|FL413518.1|FL413518
genomic: AGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAGgtgctttgtt ... taaatgtcagGTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAG
EST: AAAATAACTGGCAAAGAGGGACTATACTTCTCAG GTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAG
genomic: AAAATAACTGGCAAAGAGGGACTATACTTCTCAGgtgctttgtt ... taaatgtcagGTCCTGCATTAGTTTTTGAGGGTGAAGAGTCCATGATTACAGCTATCTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTATCAAACCAACTGGCCATATTCAAATACTTTATGGCAATCTTGCACCAGAAGGTTCTGTAGCAAAAATAACTGGCAAAGAGGGACTATACTTCTCAGgtgctttgttgcttctatctccaatccttggaagtctctgtattatgtgtggggtttaactgttatttggtaaatgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG