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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAACTAAAACATTGATCCATGCATTTCTTGATCCTGCCAAATCACTGACACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatcccatttgaaactcttttttttttgtattagttattccttcctcagatcccacttatgtgggagccgccaacactgggtctgtcctatgcactggctgattgttttttctgcttaccag

Basic information

species Zea mays
transcript GRMZM2G013908_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013908_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g32750.1 (Oryza sativa), 5'ss of exon 9
GTTAACTAAAACATTGATCCATGCATTTCTTGATCCTGCCAAATCACTGACACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatcccatttgaaactcttttttttttgtatt--agttattccttcctca-gatcccacttatgtgggagccgccaacactgggtctgtcctatgcactggctgattgttttttctgcttaccag
| | || |  || ||| |||| | |||||||||||||   |||||| |||||||||| ||||||||  | ||||||||||||||| |||||||||| || |||  |||  ||  || ||  | |  |||| ||||  ||  |    || ||||  ||     || | |   ||                                                       
GGTGACAAGGACGTTGGTCCAGGGATTTCTTGATCCTCAGAAATCATTGACACAACACTATGGTGCGATTCAAGGGATATCTGCATTGGGGCCCAGTGCAgtaagtcctgttc-aagctaatctaattttatatttcagcaaaattttgctcacaatttttgttctttaccag-------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661346|gb|BM501365.1|BM501365
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGGA
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGG-A
EST: gi|76283812|gb|DV023380.1|DV023380
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
EST: gi|26455852|gb|CA827435.1|CA827435
EST:     CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCG                         ATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG
genomic: CACAACATTATGGTGCTGTCCAAGGGATATCTGCACTGGGGCCCAGCGCGgtagatccca ... tgcttaccagATTAGACTCCTTCTTTTGCCCAACCTTGTGACATATATGCAACTTCTGGAG