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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgtttttttttcttctttatgttgtgtttttatattaccctcactccataacaccatttgcaaaaaaaataaaaactccagtttgttctgtactg...

Basic information

species Zea mays
transcript GRMZM2G011893_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352045|gb|DN219018.1|DN219018
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|78179760|gb|DV550133.1|DV550133
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|60393994|gb|DN226864.1|DN226864
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|211290372|gb|FL395524.1|FL395524
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|60348982|gb|DN215955.1|DN215955
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|8577165|gb|BE129802.1|BE129802
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|78122303|gb|DV540687.1|DV540687
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|60352117|gb|DN219090.1|DN219090
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|71428221|gb|DR809271.1|DR809271
EST:     GCGGCAGTTGTGGAACTCAGGCAACCCG                         AATATTGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|60350066|gb|DN217039.1|DN217039
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|12047218|gb|BF729357.1|BF729357
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|60357511|gb|DN224484.1|DN224484
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: gi|211246375|gb|FL451973.1|FL451973
EST:     GCGGCAGTTGTGGAACTCAGGCAACACG                         AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA