1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
GAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaacaaaaaaaattcttgttcactgcaactggaacagtactaaccttttttgggactaccagtccaccatggtgttaagcactacaacaacaac...
species | Zea mays |
transcript | GRMZM2G011219_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|67019074|gb|CO447823.1|CO447823
genomic: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|211487822|gb|FL394864.1|FL394864
genomic: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: AAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|211348173|gb|FL379645.1|FL379645
genomic: AAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|211031754|gb|FL369431.1|FL369431
genomic: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: AAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|211068379|gb|FL392617.1|FL392617
genomic: AAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|60399347|gb|DN232161.1|DN232161
genomic: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAATEST: gi|211209479|gb|FL385673.1|FL385673
genomic: CTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
EST: AAAAAGGTTCAGATTTTGCAG GCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
genomic: AAAAAGGTTCAGATTTTGCAGgtattacaac ... cttccgacagGCTGTTGGTTACAACTCCATTGAAGCTGAAGACTGGGAGCTTGCTACTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGTGCTCTTATGGAGTTGAAGAAAGAACTCCAGGAAAGACCTACACAAAAACTGGTAGATGATCTCAAGAAAAAGGTTCAGATTTTGCAGgtattacaacaaaaaaaattcttgttcactgcaactggaacagtactaaccttttttgggactaccagtccaccatggtgttaagcactacaacaacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacaa