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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctcccagtgacattgctgtattagaatgtgttgcagataacccggacacaggttcatgctcatgctgattgctgaccccacacag

Basic information

species Zea mays
transcript GRMZM2G011078_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011078_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g38590.1 (Oryza sativa), 5'ss of exon 9
GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctcccagtgacattgctgtatta--gaatgtgttgcagataacccggacacaggttcatgctcatgctgattgctgaccccacacag------------------
||| ||||| ||||| || || |||||||||||||| |||||||||||||| |||   |  || | | | ||||  ||  || ||| | ||              |   ||   ||   |       | | ||||                     
GAATGAGAGTGCTCTGAAATTTGGATGGTTTTTCCTGTTCTACTTGgtgagttccatttatcactacagaattactgatagttttgtacattgtttctttgttcctat-tgaggatttggggcaagaatctcacatgtttgtgttgacacaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927248|gb|DV171197.1|DV171197
EST:     GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG                         ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTT
genomic: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTT
EST: gi|71440938|gb|DR821988.1|DR821988
EST:     AAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG                         ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
genomic: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
EST: gi|78080153|gb|DV508565.1|DV508565
EST:     GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG                         ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCATTTCTCTTC
genomic: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
EST: gi|76280657|gb|DV020225.1|DV020225
EST:     TTTCCTCTTCTACTTG                         ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
genomic: TTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
EST: gi|89760515|gb|DY688892.1|DY688892
EST:     TTTTCCTCTTCTACTTG                         ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTT
genomic: TTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC