1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CAAAACTATTGACAATGACATATTACTGATGGACAAGACCTTTGGATTTGATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAGgtgattgcttcagcaacatcttagtctatgaagcacatataaatcttactccctctgtcccataaagagtgtcattctcatttcccaagaagttaaacgt...
species | Zea mays |
transcript | GRMZM2G009591_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAG GCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGCEST: gi|67014533|gb|CO443282.1|CO443282
genomic: ATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAGgtgattgctt ... tggactttagGCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGC
EST: ATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAG GCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGCEST: gi|160481643|gb|EY254213.1|EY254213
genomic: ATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAGgtgattgctt ... tggactttagGCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGC
EST: ACAAAGAGCTATCAACTCTGCATACATTGAG GCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGCEST: gi|160481647|gb|EY254217.1|EY254217
genomic: ACAAAGAGCTATCAACTCTGCATACATTGAGgtgattgctt ... tggactttagGCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGC
EST: ATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAG GCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGC
genomic: ATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAGgtgattgctt ... tggactttagGCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAACTATTGACAATGACATATTACTGATGGACAAGACCTTTGGATTTGATACTGCAGTGGAAGCTGCACAAAGAGCTATCAACTCTGCATACATTGAGgtgattgcttcagcaacatcttagtctatgaagcacatataaatcttactccctctgtcccataaagagtgtcattctcatttcccaagaagttaaacgt
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaagag