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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCATTGGACTGGTCAAGCTGATGGGAAGAAGCAGCGGCTTCATCACAATGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgagaatgtttggttgagttcgtgactggtgcaccaaattactaaggccctgttttgaccccaaggctaaaaattggcccatcttgtgataata...

Basic information

species Zea mays
transcript GRMZM2G009591_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009591_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os10g26570.1 (Oryza sativa), 5'ss of exon 10
TGGCATTGGACTGGTCAAGCTGATGGGAAGAAGCAGCGGCTTCATCACAATGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgagaatgtttggttga-gttcgtgactggtgcaccaaattactaaggccctgttttgaccccaaggctaaaaattggcccatcttgtgataata
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||    | | ||  ||||   |   | ||   || || |    ||||  |       |||| |   | ||| |    |   | || |   |      
TGGCATTGGATTGGTCAAGCTGATGGGAAGAAGCAGTGGCTTTATCACAATGCATGCTTCCCTGTCTAGTGGCCAAGTAGATATCTGCCTGATACCTGAGgtatga----actcttctgttgttatgtataacctatgtactatgccactacag-------ttgatc---aagctcatcggtaatctatgtgaag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|92088053|gb|EB484284.1|EB484284
EST:     TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG                         GTACCATTCACTCTTGATGGACCGAATGGAGTTCTTCAACATCTCGAACAC
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: gi|67014533|gb|CO443282.1|CO443282
EST:     TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG                         GTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: gi|160481643|gb|EY254213.1|EY254213
EST:     TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG                         GTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: gi|160481647|gb|EY254217.1|EY254217
EST:     TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG                         GTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: gi|211370273|gb|FK995942.1|FK995942
EST:     TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG                         GTACCATTCACTCTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC