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ACCCGATGGACAGGCATCTGTTGAGGCTCAAGAGTTTGGATTGGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatccattcttcttgtggattcattcaattcatctaggactccagattgagcatctggcaatgactccacccagtgttgtattaccaaaaccgtc...
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|33100633|gb|CF060593.1|CF060593
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|14244855|gb|BG842793.2|BG842793
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|13177701|gb|BG349130.1|BG349130
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|14243138|gb|BG840841.2|BG840841
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|28984501|gb|BQ539125.2|BQ539125
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|60396153|gb|DN229022.1|DN229022
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAG-ACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|211186706|gb|FL252851.1|FL252851
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAAACTGGEST: gi|16925921|gb|BM078989.1|BM078989
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAA-CTGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|13177698|gb|BG349129.1|BG349129
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|37426214|gb|CF650858.1|CF650858
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|18650378|gb|BM499197.1|BM499197
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAGCTGGGEST: gi|33102029|gb|CF061989.1|CF061989
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|60358728|gb|DN225701.1|DN225701
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|211505179|gb|FL436188.1|FL436188
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|211507463|gb|FL431647.1|FL431647
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|60353604|gb|DN220577.1|DN220577
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|71774336|gb|DR972214.1|DR972214
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|60353656|gb|DN220629.1|DN220629
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAAATGGGEST: gi|116813437|gb|EC855888.1|EC855888
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|76010925|gb|DT938095.1|DT938095
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|89755425|gb|DY685846.1|DY685846
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTTTAAGCGGAAGAACTGGGEST: gi|33100890|gb|CF060850.1|CF060850
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGTGGAAGAACTGGGEST: gi|13178561|gb|BG349819.1|BG349819
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|16377885|gb|BI992166.1|BI992166
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGGEST: gi|60346391|gb|DN213364.1|DN213364
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
EST: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTG CATCATGGAAGGACAAACTGATGCGGCTGAGGTTTAAGCGGAAGAACTGGG
genomic: GGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatcc ... gcttcgacagCATCATGGAAGGACAAACTGATGCGGCTGAGGTCTAAGCGGAAGAACTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCGATGGACAGGCATCTGTTGAGGCTCAAGAGTTTGGATTGGTGAAGAACATGCTCATTGCAGCCGTAGAAGAGAGATACAAGGATGCTGgtaatgatccattcttcttgtggattcattcaattcatctaggactccagattgagcatctggcaatgactccacccagtgttgtattaccaaaaccgtc
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG