1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGGTTCATAAACAGAACTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttatacttccatctctcttggcctaacagaaacagaaccatgtcatagcctaaatgtcggttgatgccgttcttttggtatttcag
species | Zea mays |
transcript | GRMZM2G004352_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTGAGTCCTGTTTGCTGCATCACTTCTEST: gi|76010525|gb|DT937695.1|DT937695
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGT----CCTGTTTGCTGCATCACTTCT
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCGEST: gi|76010526|gb|DT937696.1|DT937696
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAATCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGAACA-CAAAGCAGCCCATGAGGCGEST: gi|71317337|gb|DR795362.1|DR795362
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCGEST: gi|18167877|gb|BM337717.1|BM337717
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCGEST: gi|71317339|gb|DR795363.1|DR795363
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: AAGCCCGCA-CTAAGCAAAGATCAGCAACAAAAACTTTAC-AGATGGGCA GTCCTGTTTGCTGCATCACTTTCTGAEST: gi|149100297|gb|EE186362.2|EE186362
genomic: AAGCC-GCAACTAAGCAAAGATCAGCAACAAAACCTT-ACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTT-CTGA
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCGEST: gi|148954648|gb|EC900095.2|EC900095
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: AAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCGEST: gi|91872112|gb|EB402069.1|EB402069
genomic: AAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTCCTGTTTGTTGCATCACTTTTGAAGAACAACAAAGCAGCCCATGAGGCGEST: gi|149100298|gb|EE186363.2|EE186363
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCATGAGGCG
EST: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCA GTCCTGTTTGCTGCATCACTTCTGAAGA-CAACAAAGCAGCCCA
genomic: CTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttata ... ggtatttcagGTCCTGTTTGCTGCATCACTTCTGAAGAACAACAAAGCAGCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTCATAAACAGAACTAAGCCGCAACTAAGCAAAGATCAGCAACAAAACCTTACCAGATGGGCAgtgagttatacttccatctctcttggcctaacagaaacagaaccatgtcatagcctaaatgtcggttgatgccgttcttttggtatttcag
- - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG