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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACTACTCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattttatttgttttttaatgaaaaaaatagttaacctttcatatctatacttgtgcttgaatacatatgtccctgctgactcgttctactgcactcag

Basic information

species Zea mays
transcript GRMZM2G000937_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000937_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g39810.4 (Oryza sativa), 5'ss of exon 5
GAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACTACTCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattttatttgt-tttttaatgaaaaaaatagttaacctttcatatctatacttgtgcttgaatacatatgtccctgctgactcgttctac-tgcactcag
|||| | |||||| ||||| || |||||||| ||||| |||||||| ||||| || ||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||| | |   | ||| || |  |  | |||    |  | |  |  | ||  |||| |   |  | |        | ||||||   | | | ||    |||
GAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCGACACCTTATTACTCTACATTACATTACAACCTACCTATGCGCTTTTTGGACTGTACTCCTAGgtgattattctttcattgtttctagtccagtagatatagcatttctttttaccatg-ttgtaccc-atcatagccaattatcctgacttagtttgcatgttaccag

upper sequence: GRMZM2G000937_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 6
GAGTGAGGAGTGTTCTCTTTCTCATGCCTTGTCATTCAACACCTTACTACTCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttat--tttatttgttttttaatgaaaaaaatagttaacctttcatatctatac-ttgtgcttgaatacatatgtccctgctgactcgttctact-gcactcag
|||| | |||||| ||||| || |||||||| |||||||||||||| ||||| || ||||||||||| || |||||||| ||||||||||| ||||||||||| ||||   ||   | |||| || || |  | |||  || | |||||| |   ||  |||| | ||| |  |        | ||||||     | || |    |||
GAGTAAAGAGTGTCCTCTTCCTTATGCCTTGCCATTCAACACCTTATTACTCTACATTACATTACAACCTGCCTATGCGCTTTTTGGACTGTACTCCTAGgtgattatgccttcacttttttctagtgcagtagata--tagcatttcattttactatgttgtacctgatt-tagccaattatcctgacttagcgtgcttgttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110506408|gb|EE017968.1|EE017968
EST:     TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGG                         TGATAGCAAAGGGACCTTGGATGAGTCAGATCGGTTTCCTTACAAGTCCA
genomic: TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTA-Ggtggttattt ... ctgcactcagTGATAGCAAAGGGACCTTGGATGAGTCAGATC-GTTTCCTTACAAGTCCA
EST: gi|148929350|gb|EC875261.2|EC875261
EST:     TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAG                         TGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATC
genomic: TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattt ... ctgcactcagTGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATC
EST: gi|6653847|gb|AW267252.1|AW267252
EST:     TCAACCTTCCATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAG                         TGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATC
genomic: TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattt ... ctgcactcagTGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATC
EST: gi|211018072|gb|FL437095.1|FL437095
EST:     TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAG                         TGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATC
genomic: TCAACCTTACATTACAATCTACCTATGCGTTTTTTGGACTGCACTCCTAGgtggttattt ... ctgcactcagTGATAGCAAAGGGACCTTGGATGAGTCAGATCGTTTCCTTACAAGTCCATC