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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCCGACGTGTTCCACCTGATGACCGGCCTGTGGGCGACCACGGCCGAGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggctctttttatttctccgtggtttattatatattagcagcacgctgttaattaattaattaattaatcgccgggtcttttatatatgtttgtgtgaccagcag

Basic information

species Zea mays
transcript GRMZM2G000842_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000842_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os05g37170.4 (Oryza sativa), 5'ss of exon 11
AAGATCCGACGTGTTCCACCTGATGACCGGCCTGTGGGCGACCACGGCCGAGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgt--ttccggctctttttatttctccgtggtttattatatattagcagcacgctgttaattaattaattaattaatcgccgggtcttttat-atatgtttgtgtgaccagcag
 || ||||||||||||||||||||||| ||| |||||||| |  |||||||||| ||||||||||||||||  || ||||| || || ||||| ||||| ||     |    | |  | ||| |     ||     |   |  |  |  | |   |    ||| |  ||      |       |  | ||| || ||  | | | |||||   
CAGCTCCGACGTGTTCCACCTGATGACTGGCATGTGGGCGGCGCCGGCCGAGCGGTGCTTCCTCTGGATGGCCGGTTTCCGGCCATCAGAAATTCTCAAAgtagacacacaacataattttttttttcagtaagacacgcacgattattaaggcat--gctaaattcttggccttttttttttttgtctatgatttgcctttttcaccag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71760398|gb|DR958335.1|DR958335
EST:     AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTCCTGAAATCCTCAAG                         ATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
genomic: AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggct ... tgaccagcagATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
EST: gi|88758004|gb|DY542145.1|DY542145
EST:     AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAG                         ATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
genomic: AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggct ... tgaccagcagATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
EST: gi|91869978|gb|EB400638.1|EB400638
EST:     GGGAGGGTTCCGTCCTTCTGAAATCCTCAAG                         ATGCGGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
genomic: GGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggct ... tgaccagcagATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
EST: gi|71757092|gb|DR955029.1|DR955029
EST:     AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAG                         ATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
genomic: AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggct ... tgaccagcagATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
EST: gi|88753493|gb|DY537634.1|DY537634
EST:     AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAG                         ATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
genomic: AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggct ... tgaccagcagATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
EST: gi|74246417|gb|DT654331.1|DT654331
EST:     AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAG                         ATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG
genomic: AGCGATGCTTCCTCTGGATGGGAGGGTTCCGTCCTTCTGAAATCCTCAAGgtttccggct ... tgaccagcagATGCTGATACCGCAGCTCGACCCTCTCGCGGAGCCGCAGCTGATAGGGATG