1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaaagctgaagagagagtggaagtatttgagcatgttaaatccaatattaacacattgtctgttgatcttgtcag
species | Zea mays |
transcript | GRMZM2G000510_T04 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACEST: gi|78109061|gb|DV527478.1|DV527478
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGAC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|213173050|gb|FM188194.1|FM188194
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|71332542|gb|DR803240.1|DR803240
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|76292714|gb|DV032282.1|DV032282
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|71758598|gb|DR956535.1|DR956535
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|211425383|gb|FL463585.1|FL463585
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|110210924|gb|EC892821.1|EC892821
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|6501109|gb|AW202482.1|AW202482
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|32907582|gb|CF012395.1|CF012395
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: GGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|71758726|gb|DR956663.1|DR956663
genomic: GGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|4886008|gb|AI677128.1|AI677128
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|71332543|gb|DR803241.1|DR803241
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|211234201|gb|FK951229.1|FK951229
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGCEST: gi|69351358|gb|DR452107.1|DR452107
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
EST: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAG GTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
genomic: TTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaa ... atcttgtcagGTTCAAAAGCTGTTTGTGAGGAAAGCGACAAGCTGAAGATAGAGTTTTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCCTTTGGCATTTTACAAAGGCTTCCTGCCAAACTTTGCAAGACTGGGATCTTGGAATGTGATTATGTTCTTGACATTGGAGCAGgtaaatgaaaagctgaagagagagtggaagtatttgagcatgttaaatccaatattaacacattgtctgttgatcttgtcag
- - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG