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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttcacttttttgctaccttgaagctacctggatcacttgaccttcatgctgaatccggcttaccatgcccctgcag

Basic information

species Zea mays
transcript GRMZM5G876003_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G876003_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os02g38060.2 (Oryza sativa), 5'ss of exon 7
GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttcacttttttgctaccttgaagctacctgg--atcacttgaccttcatgctgaatccggcttaccatgcccctgcag------------------------------------
|||| |||||||| |||||||||||||||| | ||| |||||||||| ||||   |   |    |||||| |    || ||   || |||  |   |             | |||   | |  ||  ||                                    
GATGCGAAAAACAAAATGTTCATTCTGTTCCATTTCCGGAAAAAGgtcagttatgccactgccgtaccttaattgcacttgaaaattactctatactttgatcattgagagattattgttcagctatagtctggcattgaatgctgtggtttcacgtctttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60395258|gb|DN228127.1|DN228127
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|78093364|gb|DV521738.1|DV521738
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|78074349|gb|DV502783.1|DV502783
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|148948105|gb|EC893614.2|EC893614
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|74240434|gb|DT648348.1|DT648348
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|74235314|gb|DT643228.1|DT643228
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTTTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|78093365|gb|DV521739.1|DV521739
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
EST: gi|76923219|gb|DV169381.1|DV169381
EST:     GATGTGAAAAACAGAATGTTCATTCTGTTTTACTTCAGGNNNNNN                         NNNNNNNGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC
genomic: GATGTGAAAAACAGAATGTTCATTCTGTTCTACTTCAGGAAAAAGgttagtttca ... gcccctgcagGAAAAAAGTAAGGTGGCGAAGAGCATCGATTGGCCACAGCTGAAACCGTGC