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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTGTGTTGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttcaattctccctcttcaaactggattttccagctctctttcttgctcatccaacctccataaccgaactcgaagcatggtcgtcctcaatgcag

Basic information

species Zea mays
transcript GRMZM5G872373_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872373_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os08g41670.1 (Oryza sativa), 5'ss of exon 8
TCATTTGTGTTGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttcaattctccctc--------ttcaaactggattttccagctctctttcttgctcatccaacctccataaccgaactcgaagcatggt-----cgtcctcaatgcag
|| ||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||| ||   |   |    ||        | |||      | |||  ||||  || |       | |        |   | |||   || | || |       |   ||||||||
TCGTTTGTGTTGACCTTCCTGGCGGAGTGGGGCGACCGAAGTCAGATTGCCACAATTGCGgtaaggcctacccccttttcagcaattttccaacacttctcttcttgctcaattccccagcacttcttttcttgttcacaaaccgtaaacttgttgcatttcttgccaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427885|gb|DR808935.1|DR808935
EST:     TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG                         CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: gi|213172903|gb|FM183104.1|FM183104
EST:     TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG                         CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: gi|148954539|gb|EC899976.2|EC899976
EST:     TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG                         CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: gi|213172917|gb|FM194792.1|FM194792
EST:     TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG                         CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: gi|74234157|gb|DT642071.1|DT642071
EST:     TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG                         CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: gi|91867347|gb|EB399652.1|EB399652
EST:     TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG                         CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG