1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaattttttgacttcattttatctgcttcattgtttaccattatctgtttgggctggagatttggagcgcttgaatttcagtcttatatgctctatcaagtattaactcttgacttgatttctttgaacag
species | Zea mays |
transcript | GRMZM5G871861_T03 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149004383|gb|EE039059.2|EE039059
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149004383|gb|EE039059.2|EE039059
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149004383|gb|EE039059.2|EE039059
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149004383|gb|EE039059.2|EE039059
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149004383|gb|EE039059.2|EE039059
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|78113561|gb|DV531952.1|DV531952
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|78113561|gb|DV531952.1|DV531952
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|78113561|gb|DV531952.1|DV531952
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|78113561|gb|DV531952.1|DV531952
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|78113561|gb|DV531952.1|DV531952
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|78113561|gb|DV531952.1|DV531952
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|71449411|gb|DR830461.1|DR830461
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|71449411|gb|DR830461.1|DR830461
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|71449411|gb|DR830461.1|DR830461
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|71449411|gb|DR830461.1|DR830461
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|71449411|gb|DR830461.1|DR830461
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|71449411|gb|DR830461.1|DR830461
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149001459|gb|EE038760.2|EE038760
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149001459|gb|EE038760.2|EE038760
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149001459|gb|EE038760.2|EE038760
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149001459|gb|EE038760.2|EE038760
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149001459|gb|EE038760.2|EE038760
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT GEST: gi|149001459|gb|EE038760.2|EE038760
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
EST: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCAT G
genomic: ATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaa ... ctttgaacag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTCCAACAAGAACATCTCTTTTGGAACAATTGACCTTGGGCATTTCCCAAATGCTGCAGCAAAGTTTGGGATATCCATgtggggtaaattttttgacttcattttatctgcttcattgtttaccattatctgtttgggctggagatttggagcgcttgaatttcagtcttatatgctctatcaagtattaactcttgacttgatttctttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG