1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTTCGAGTGCCCCGGATTTTGGGCAGGGTCGACAAGTTTTAGCTGTTTATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatcttaaggtgcacattaaaacaatggatagttagtcataataatgatgcaaaattttcttgtgtacttcaatttcgaaatttgatgcattactg...
species | Zea mays |
transcript | GRMZM5G862959_T04 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|29944943|gb|CB815388.1|CB815388
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|74236008|gb|DT643922.1|DT643922
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|78116253|gb|DV534640.1|DV534640
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|13126562|gb|BG317132.1|BG317132
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|74244628|gb|DT652542.1|DT652542
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|101384361|gb|EB814225.1|EB814225
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|113703551|gb|EE681055.1|EE681055
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|149071365|gb|EE159760.2|EE159760
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|50326335|gb|CO521461.1|CO521461
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|13126563|gb|BG317133.1|BG317133
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|78084340|gb|DV512733.1|DV512733
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|60345456|gb|DN212429.1|DN212429
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|9733040|gb|BE511792.1|BE511792
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGAEST: gi|60396327|gb|DN229196.1|DN229196
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
EST: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAG AGGAAGTCTGATGA
genomic: ATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatctt ... aatattccagAGGAAGTCTGATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTCGAGTGCCCCGGATTTTGGGCAGGGTCGACAAGTTTTAGCTGTTTATCCTGGCACAACAGCATTATACAGAGCTACCGTAGCTTCTCATCGTAAGgtaacatcttaaggtgcacattaaaacaatggatagttagtcataataatgatgcaaaattttcttgtgtacttcaatttcgaaatttgatgcattactg
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