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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGCACATAGATGGTCAAAAACGCTGGATCGGTAACAGTACTTTCGCCGATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGGgtaaatcatcttgccttggaccaccattgtacttaagcatccaaccgattatgaacacgctatattttcttccaatctgttgtctcaagcgccaaccctatcttcgtgttataaagtcagtttccactgacgagttctgcgttgccttgttttctcgcttccaccag

Basic information

species Zea mays
transcript GRMZM5G862219_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G862219_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os01g06600.2 (Oryza sativa), 5'ss of exon 7
GGTGGCACATAGATGGTCAAAAACGCTGGATCGGTAACAGTACTTTCGCCGATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGGgtaaatcatcttgccttggaccaccattgtacttaagcatccaaccgattatgaacacgctatattttcttccaatctgttgtctcaagcgccaaccctatcttcgtgttataaagtcagtttccactgacgagttctgcgttgccttgttttctcgcttccaccag
|||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||| || ||||| ||||||||  | ||| |||| ||||||||||||| ||||  || || ||      | |  |||  | ||  || |    ||||    ||||   || ||    ||||  |   |||   | |  || | |                                                                  
GGTGGCACATAGATGGACAAAAACGCTGGATTGGTAACAGTACTTTTGCTGATGTGCTCGTGGTATTAGCTAGGAATGCCAATACAAAACAACTAAATGGgtaaaccatca-gctttagat-----tcgatctttggaattgaagcataaatgactcagctagtgttgct----atctaataattcatttggct-ccttgtag----------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23357691|gb|BU645340.1|BU645340
EST:     AATGCAGACACACAACAGCTAAATGG                         GTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
genomic: AATGCAGACACACAACAGCTAAATGGgtaaatcatc ... cttccaccagGTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
EST: gi|148997896|gb|EE035880.2|EE035880
EST:     GATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGG                         GTTCATTGTGCCGAAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGA
genomic: GATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGGgtaaatcatc ... cttccaccagGTTCATTGTGCGGAAA-GGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGA
EST: gi|91874338|gb|EB404295.1|EB404295
EST:     GATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGG                         GTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
genomic: GATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGGgtaaatcatc ... cttccaccagGTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
EST: gi|71533929|gb|DR784688.1|DR784688
EST:     GATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACGCAACAGCTAAATGG                         GTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
genomic: GATGTGCTCGTCGTGTTAGCCAGGAATGCAGACACACAACAGCTAAATGGgtaaatcatc ... cttccaccagGTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
EST: gi|26557908|gb|CA830143.1|CA830143
EST:     AGCCAGGAATGCAGACACACAACAGCTAAATGG                         GTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA
genomic: AGCCAGGAATGCAGACACACAACAGCTAAATGGgtaaatcatc ... cttccaccagGTTCATTGTGCGGAAAGGAGCTCCTGGCCTGAAAGCTACAAAGATCGAGAA