1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TATAGCTACACCAGAGAGAGCATTGCATACTGCAAACCTGTGTGTGAGGCTTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatcacatcttatctgcacacttctttacttgtgttgtagcaacggcccacctgaccgacatttgagattgacgtagttagctcactccgaatcctattgtgcag
species | Zea mays |
transcript | GRMZM5G855200_T02 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCG AATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTCEST: gi|213173945|gb|FM183429.1|FM183429
genomic: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatca ... tattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
EST: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCG AATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTCEST: gi|67014422|gb|CO443171.1|CO443171
genomic: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatca ... tattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
EST: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCG AATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
genomic: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatca ... tattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAGCTACACCAGAGAGAGCATTGCATACTGCAAACCTGTGTGTGAGGCTTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatcacatcttatctgcacacttctttacttgtgttgtagcaacggcccacctgaccgacatttgagattgacgtagttagctcactccgaatcctattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA