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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAACACAAGAGGCTGGTTCAAAATTTGAACTGCTAGGTTTTGCAGCTGTGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAGgttggtcctcttccagctttactttctgtttatggggggtgtcctgtatttagtcaatttccttgaagttattccatggcactgctaggttctttttgct...

Basic information

species Zea mays
transcript GRMZM5G851405_T01
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60354044|gb|DN221017.1|DN221017
EST:     TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAG                         ATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
genomic: TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAGgttggtcctc ... tatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
EST: gi|32907121|gb|CF011934.1|CF011934
EST:     TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAG                         ATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
genomic: TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAGgttggtcctc ... tatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
EST: gi|31611898|gb|CD568520.1|CD568520
EST:     TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAG                         ATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
genomic: TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAGgttggtcctc ... tatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
EST: gi|211075917|gb|FL128709.1|FL128709
EST:     TGCATAACTTCTTTCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAG                         ATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
genomic: TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAGgttggtcctc ... tatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
EST: gi|71766135|gb|DR964072.1|DR964072
EST:     TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAG                         ATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT
genomic: TGCATAACTTCTATCATTATCCTGAGAGTATTCGCTTACGAATCAGCCAGgttggtcctc ... tatttttcagATACTTGTGTTGCCACCTTATCAGGGTGAAGGCCATGGTCTTGGTCTTCTT