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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaggaaacctgtttattgtctcacagggatcatcacaagtag...

Basic information

species Zea mays
transcript GRMZM5G850355_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G850355_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g42320.1 (Oryza sativa), 5'ss of exon 6
TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaggaaacctgttta---ttgtctcacagggatcatcacaagtag-
||||||||||||||||||||||||| | |||||||| ||||| |||||||||||||||||| |||||||||||| | ||   || | |  |||||   |        |  ||   |   ||||||||  |        ||| |   ||||||||     |   |   ||||   
TGGTGTAAGACCATTTGGAGTATCATTATTGATTGCCGGGTACGATGACAATGGCCCACAGCTGTATCAGgtatgcagat--agctgcgtgataggggctctt--ttttgttgcaactgtttcaaaattaatgtgtacgttgacccttgtctcaataataagctgcaaagtgtt

upper sequence: GRMZM5G850355_T02 (Zea mays), 5'ss of exon 8
lower sequence: Vv01s0011g01960.t01 (Vitis vinifera), 5'ss of exon 7
TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaagaagttacaagatagaaacctcaaacctgtttatcaacctttcaaaaaaaggaaacctgttt---attgtctcacagggatcatcacaagtag---
||||||||| || |||||||||||||||||| ||||||| | |||||||||||| ||||| ||||| ||||||  |     || ||  ||| | ||    | || | | ||||| ||  |   |   || |     |  |||   | ||  |   | ||||           |   
TGGTGTAAGGCCCTTTGGAGTATCACTGTTGGTTGCTGGTTTTGATGACAATGGTCCACAATTGTACCAGgtactc-----aaattttaagtttgagttattaagcat-tttattaatatactatttaatgttcttcccttttcaaatgcatttaatggattggtgggttgggcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32942863|gb|CF047682.1|CF047682
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|60355411|gb|DN222384.1|DN222384
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|60346286|gb|DN213259.1|DN213259
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211362042|gb|FL326986.1|FL326986
EST:     TATCGCTGTTGATTGCTGGGTATGATGACNATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTTCTGGAAAGCATCAGCCATG
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATG
EST: gi|6020544|gb|AW065472.1|AW065472
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32865823|gb|CF005505.1|CF005505
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|12967997|gb|BG264944.1|BG264944
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211062081|gb|FL465317.1|FL465317
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|14203539|gb|BG837216.1|BG837216
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|6020496|gb|AW065424.1|AW065424
EST:     CAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: CAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|14243343|gb|BG841010.2|BG841010
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|22520740|gb|BU079551.1|BU079551
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|16918711|gb|BM073864.1|BM073864
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|5566889|gb|AI881800.1|AI881800
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|87156656|gb|DY401445.1|DY401445
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211218837|gb|FL350383.1|FL350383
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCA
EST: gi|14242859|gb|BG840665.2|BG840665
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32908069|gb|CF012882.1|CF012882
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|113702959|gb|EE680463.1|EE680463
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211246869|gb|FL472890.1|FL472890
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|5525504|gb|AI861397.1|AI861397
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32931156|gb|CF035968.1|CF035968
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32932932|gb|CF037744.1|CF037744
EST:     ATCGCTGTTGAT-GNCTGGGTACGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: ATCACTGTTGATTG-CTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|60359187|gb|DN226160.1|DN226160
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|56382484|gb|CV985153.1|CV985153
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|5819357|gb|AI987563.1|AI987563
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211253078|gb|FL452731.1|FL452731
EST:     CTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: CTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32931645|gb|CF036457.1|CF036457
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32930042|gb|CF034854.1|CF034854
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAGGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|71331110|gb|DR802381.1|DR802381
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|9461620|gb|BE453822.1|BE453822
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAA
EST: gi|71331106|gb|DR802380.1|DR802380
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211062082|gb|FL465318.1|FL465318
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211156517|gb|FL164231.1|FL164231
EST:     TATCACTGKTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATA
EST: gi|32868632|gb|CF008314.1|CF008314
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|14204267|gb|BG837944.1|BG837944
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|5762225|gb|AI967273.1|AI967273
EST:     CAATGGCCC-CAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: CAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|29167732|gb|CB410992.1|CB410992
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGG
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGG
EST: gi|32908068|gb|CF012881.1|CF012881
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211028588|gb|FL333340.1|FL333340
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGA
EST: gi|60354522|gb|DN221495.1|DN221495
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|78021721|gb|DV490108.1|DV490108
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32849719|gb|CD989400.1|CD989400
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211158124|gb|FL164253.1|FL164253
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCCCCGTTGTATTAG                         GTTGATCCCTCAGGATCATACTTTCTCCTGGAAGGCATCAGCCATGGGGAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTT-CTCCTGGAAGGCATCAGCCATGGG-AA
EST: gi|5108080|gb|AI739793.1|AI739793
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCNCAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|40337252|gb|CK371322.1|CK371322
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|67018206|gb|CO446955.1|CO446955
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|6031332|gb|AW076189.1|AW076189
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|211227292|gb|FL365228.1|FL365228
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|5895580|gb|AW036826.1|AW036826
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|26559204|gb|CA831439.1|CA831439
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|60341905|gb|DN208878.1|DN208878
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|33093559|gb|CF053553.1|CF053553
EST:     GGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAATGCATCAGCCATGGGAAAA
genomic: GGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|6653876|gb|AW267281.1|AW267281
EST:     TATCNCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|31355634|gb|CD439991.1|CD439991
EST:     TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
EST: gi|32906923|gb|CF011736.1|CF011736
EST:     TATCGCTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAG                         GTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA
genomic: TATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 937

TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 763

TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 778

TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 542

TGGTGTAAGACCATTTGGAGTATCACTGTTGATTGCTGGGTATGATGACAATGGCCCACAGTTGTATCAGgtatactgaa ... atttcttcagGTTGATCCCTCAGGATCATACTTCTCCTGGAAGGCATCAGCCATGGGAAAAAATGTGTCAAATGCAAAGACATTTCTTGAAAAGAG