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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagtttttgaattttagaagtcagaactcatgttgatgaacttcctgaggttattgggggctaatttattgtttctatgttctag

Basic information

species Zea mays
transcript GRMZM5G846548_T02
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G846548_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g11500.1 (Oryza sativa), 5'ss of exon 8
GAATGTTGATGGATCTTTTGAGCCCTCTGTTTCCTTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagt--ttttgaattttagaagtcagaactcatgttgatgaacttcctgaggttattgggggctaatttattgttt--ctatgt-tctag
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GGATGTTGATGGATCTCTTAAGCCCTCTGTTTCCTTCATCATTGATTGTTATAATGTGTTTAGGCAGCCTATCTCGATCCTTCAgtaagcggatttacatgatgaatttcataacc--ttttaaattttcttttaaaatgtttgttcgttaactaattatttgactatctgtatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18654521|gb|BM499326.1|BM499326
EST:     TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA                         CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: gi|18654522|gb|BM499327.1|BM499327
EST:     TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA                         CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: gi|18649151|gb|BM497970.1|BM497970
EST:     TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA                         CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: gi|88755251|gb|DY539392.1|DY539392
EST:     TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA                         CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: gi|18648891|gb|BM497710.1|BM497710
EST:     AATGTGCTTAGGCAGCCTGTCTAGGTCATTCA                         CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
genomic: AATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC